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Package Name Access Summary Updated
bioconductor-dep public Differential Enrichment analysis of Proteomics data 2024-12-21
bioconductor-synaptome.data public AnnotationData for Synaptome.DB package 2024-12-21
r-msqrob public Robust statistical inference for quantitative LC-MS proteomics. 2024-12-21
bioconductor-siamcat public Statistical Inference of Associations between Microbial Communities And host phenoTypes 2024-12-21
bioconductor-prince public Predicting Interactomes from Co-Elution 2024-12-21
bioconductor-microbiome public Microbiome Analytics 2024-12-21
bioconductor-rpa public RPA: Robust Probabilistic Averaging for probe-level analysis 2024-12-21
bioconductor-phyloseq public Handling and analysis of high-throughput microbiome census data 2024-12-21
pycoverm public Python bindings for CoverM 2024-12-21
mcscanx public Multiple Collinearity Scan toolkit X version 2024-12-21
allhic public Genome scaffolding based on HiC data in heterozygous and high ploidy genomes 2024-12-21
pantools public PanTools is a pangenomic toolkit for comparative analysis of large numbers of genomes. 2024-12-21
cooler public Sparse binary format for genomic interaction matrices. 2024-12-21
bioconductor-ahpathbankdbs public Metabolites and proteins linked to PathBank pathways (for AnnotationHub) 2024-12-21
bioconductor-gdrimport public Package for handling the import of dose-response data 2024-12-21
bioconductor-mpranalyze public Statistical Analysis of MPRA data 2024-12-21
bioconductor-ahwikipathwaysdbs public Metabolites linked to WikiPathways pathways (for AnnotationHub) 2024-12-21
bioconductor-xeva public Analysis of patient-derived xenograft (PDX) data 2024-12-21
bioconductor-discorhythm public Interactive Workflow for Discovering Rhythmicity in Biological Data 2024-12-21
bioconductor-panther.db public A set of annotation maps describing the entire PANTHER Gene Ontology 2024-12-21
bioconductor-pmp public Peak Matrix Processing and signal batch correction for metabolomics datasets 2024-12-21
bioconductor-ctrap public Identification of candidate causal perturbations from differential gene expression data 2024-12-21
bioconductor-treg public Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data 2024-12-21
bioconductor-ucscrepeatmasker public UCSC RepeatMasker AnnotationHub resource metadata 2024-12-21
bioconductor-dinor public Differential NOMe-seq analysis 2024-12-21
bioconductor-blima public Tools for the preprocessing and analysis of the Illumina microarrays on the detector (bead) level 2024-12-21
bioconductor-toxicogx public Analysis of Large-Scale Toxico-Genomic Data 2024-12-21
bioconductor-cytokernel public Differential expression using kernel-based score test 2024-12-21
bioconductor-experimenthub public Client to access ExperimentHub resources 2024-12-21
bioconductor-rnasense public Analysis of Time-Resolved RNA-Seq Data 2024-12-21
bioconductor-radiogx public Analysis of Large-Scale Radio-Genomic Data 2024-12-21
bioconductor-customcmpdb public Customize and Query Compound Annotation Database 2024-12-21
bioconductor-yamss public Tools for high-throughput metabolomics 2024-12-21
bioconductor-metaboannotation public Utilities for Annotation of Metabolomics Data 2024-12-21
bioconductor-scmultisim public Simulation of Multi-Modality Single Cell Data Guided By Gene Regulatory Networks and Cell-Cell Interactions 2024-12-21
r-biomartr public Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized way to automate genome, proteome, 'RNA', coding sequence ('CDS'), 'GFF', and metagenome retrieval from 'NCBI RefSeq', 'NCBI Genbank', 'ENSEMBL', 'ENSEMBLGENOMES', and 'UniProt' databases. Furthermore, an interface to the 'BioMart' database (Smedley et al. (2009) <doi:10.1186/1471-2164-10-22>) allows users to retrieve functional annotation for genomic loci. In addition, users can download entire databases such as 'NCBI RefSeq' (Pruitt et al. (2007) <doi:10.1093/nar/gkl842>), 'NCBI nr', 'NCBI nt', 'NCBI Genbank' (Benson et al. (2013) <doi:10.1093/nar/gks1195>), etc. as well as 'ENSEMBL' and 'ENSEMBLGENOMES' with only one command. 2024-12-21
bioconductor-msqrob2 public Robust statistical inference for quantitative LC-MS proteomics 2024-12-21
bioconductor-chronos public CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis 2024-12-21
bioconductor-dune public Improving replicability in single-cell RNA-Seq cell type discovery 2024-12-21
bioconductor-msexperiment public Infrastructure for Mass Spectrometry Experiments 2024-12-21
bioconductor-screencounter public Counting Reads in High-Throughput Sequencing Screens 2024-12-21
bioconductor-sspaths public ssPATHS: Single Sample PATHway Score 2024-12-21
bioconductor-psmatch public Handling and Managing Peptide Spectrum Matches 2024-12-21
bioconductor-tidybulk public Brings transcriptomics to the tidyverse 2024-12-21
bioconductor-hdxmsqc public An R package for quality Control for hydrogen deuterium exchange mass spectrometry experiments 2024-12-21
bioconductor-tcgabiolinks public TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data 2024-12-21
bioconductor-tomoda public Tomo-seq data analysis 2024-12-21
bioconductor-phenopath public Genomic trajectories with heterogeneous genetic and environmental backgrounds 2024-12-21
bioconductor-dominosignal public Cell Communication Analysis for Single Cell RNA Sequencing 2024-12-21
bioconductor-metnet public Inferring metabolic networks from untargeted high-resolution mass spectrometry data 2024-12-21
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