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srahunter
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public |
srahunter is a tool for processing SRA accession numbers.
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2025-07-14 |
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demultiplexer2
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public |
A python command line interface to demultiplex illumina reads.
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2025-07-14 |
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miniprot
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public |
Miniprot aligns a protein sequence against a genome with affine gap penalty, splicing and frameshift. It is primarily intended for annotating protein-coding genes in a new species using known genes from other species.
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2025-07-13 |
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syny
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public |
Genome collinearity inferences
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2025-07-11 |
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breakfast
|
public |
breakfast: fast putative outbreak cluster and infection chain detection using SNPs.
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2025-07-10 |
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gencove
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public |
Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis. This command-line interface can be used to easily access the Gencove API.
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2025-07-10 |
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fmlrc2
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public |
A rust implementation of fmlrc with faster run times.
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2025-07-10 |
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ropebwt2
|
public |
Incremental construction of FM-index for DNA sequences
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2025-07-10 |
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d4tools
|
public |
The D4 command line utility program
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2025-07-10 |
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slivar
|
public |
filter/annotate variants in VCF/BCF format with simple expressions.
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2025-07-10 |
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gotree
|
public |
gotree is a set of command line tools to manipulate phylogenetic trees.
|
2025-07-09 |
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seqtk
|
public |
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format
|
2025-07-09 |
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multitax
|
public |
Python package to obtain, parse and explore biological taxonomies.
|
2025-07-09 |
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busco
|
public |
Assessment of assembly completeness using Universal Single Copy Orthologs.
|
2025-07-09 |
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barcode-validator
|
public |
A python package for structural and taxonomic validation of DNA barcode data
|
2025-07-09 |
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pia
|
public |
PIA is a toolbox for MS based protein inference and identification analysis.
|
2025-07-09 |
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cerberus-x
|
public |
Versatile Functional Ontology Assignments via Hidden Markov Model (HMM) searching with environmental focus of shotgun 'omics data.
|
2025-07-09 |
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perl-io-zlib
|
public |
IO:: style interface to Compress::Zlib
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2025-07-09 |
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yame
|
public |
YAME: Yet Another Methylation Extractor.
|
2025-07-09 |
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iqtree
|
public |
Efficient phylogenomic software by maximum likelihood.
|
2025-07-09 |
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admixtools
|
public |
ADMIXTOOLS (Patterson et al. 2012) is a software package that supports formal tests of whether admixture occurred, and makes it possible to infer admixture proportions and dates.
|
2025-07-09 |
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ngmlr
|
public |
ngmlr is a long-read mapper designed to align PacBio or Oxford Nanopore reads to a reference genome and optimized for structural variation detection
|
2025-07-08 |
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n50
|
public |
A command-line tool to calculate the N50 value of a set of sequences and other utilities.
|
2025-07-08 |
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sniffles
|
public |
Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore).
|
2025-07-08 |
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hifiasm_meta
|
public |
Metagenome assembler for Hifi reads, based on hifiasm.
|
2025-07-08 |
