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esme_netcdf-c_mpich_4_2_3
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public |
NetCDF-C - netCDF interface for C
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2025-02-11 |
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lollipop
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public |
A tool for Deconvolution for Wastewater Genomics
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2025-02-11 |
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tbl2asn-forever
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public |
tbl2asn is a program that automates the creation of sequence records for submission to GenBank
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2025-02-11 |
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fiji
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public |
Fiji is an image processing package—a "batteries-included" distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis.
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2025-02-11 |
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piler-cr
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public |
Identification and analysis of CRISPR repeats.
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2025-02-11 |
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pycomo
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public |
PyCoMo is a software package for generating and analysing compartmentalized community metabolic models.
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2025-02-11 |
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ena-upload-cli
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public |
Command Line Interface to upload data to the European Nucleotide Archive
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2025-02-11 |
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biobb_mem
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public |
Biobb_mem is the Biobb module for membrane structure analysis.
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2025-02-11 |
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pybigtools
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public |
pybigtools: Python bindings to the Bigtools Rust library for high-performance BigWig and BigBed I/O
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2025-02-11 |
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unicore
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public |
Universal and efficient core gene phylogeny with Foldseek and ProstT5
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2025-02-11 |
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paraphase
|
public |
HiFi-based caller for highly homologous genes
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2025-02-11 |
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seqnado
|
public |
Pipelines for genomics analysis
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2025-02-11 |
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nanosim
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public |
NanoSim is a fast and scalable read simulator for Nanopore sequencing data.
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2025-02-11 |
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metabuli
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public |
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid
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2025-02-11 |
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bigtools
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public |
Bigtools provides a high-level, performant API for reading and writing bigWig and bigBed files.
|
2025-02-10 |
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raven-assembler
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public |
Raven is an assembler for raw reads generated by the third generation sequencing.
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2025-02-10 |
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r-locuszoomr
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public |
Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.
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2025-02-10 |
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r-ukbrapr
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public |
R functions to use in the UK Biobank Research Analysis Platform (RAP)
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2025-02-10 |
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peaks2utr
|
public |
A robust, parallelized Python CLI for annotating three_prime_UTR
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2025-02-10 |
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sibeliaz
|
public |
A fast whole-genome aligner based on de Bruijn graphs.
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2025-02-10 |
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libidn
|
public |
No Summary
|
2025-02-10 |
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fast2q
|
public |
A Python3 program that counts sequence occurrences in FASTQ files.
|
2025-02-10 |
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augur
|
public |
Process pathogen genome data for the Nextstrain platform.
|
2025-02-10 |
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maf2synteny
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public |
A tool that postprocesses whole genome alignment (for two or more genomes) and produces coarse-grained synteny blocks.
|
2025-02-10 |
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ska2
|
public |
SKA (Split Kmer Analysis) version 2
|
2025-02-10 |
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dxpy
|
public |
DNAnexus Platform API bindings for Python
|
2025-02-10 |
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pydamage
|
public |
Damage parameter estimation for ancient DNA.
|
2025-02-10 |
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artic-porechop
|
public |
Adapter removal and demultiplexing of Oxford Nanopore reads (fork of rrwick/Porechop)
|
2025-02-10 |
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gapseq
|
public |
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
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2025-02-10 |
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ctyper
|
public |
Genotyping sequence-resolved copy-number variation using pangenomes.
|
2025-02-10 |
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tmalign
|
public |
TM-align sequence-order independent protein structure alignment.
|
2025-02-10 |
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oarfish
|
public |
oarfish is a tool for fast, accurate and versatile transcript quantification from long-read RNA-seq data
|
2025-02-09 |
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snakemake-executor-plugin-kubernetes
|
public |
A snakemake executor plugin for submission of jobs to Kubernetes
|
2025-02-09 |
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r-tidyheatmap
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public |
This is a tidy implementation for heatmap. At the moment it is based on the (great) package 'ComplexHeatmap'. The goal of this package is to interface a tidy data frame with this powerful tool. Some of the advantages are: Row and/or columns colour annotations are easy to integrate just specifying one parameter (column names). Custom grouping of rows is easy to specify providing a grouped tbl. For example: df %>% group_by(...). Labels size adjusted by row and column total number. Default use of Brewer and Viridis palettes.
|
2025-02-09 |
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n50
|
public |
calculate N50 from FASTA/FASTQ files, producing both machine and human friendly outputs
|
2025-02-09 |
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piawka
|
public |
The powerful AWK script to calculate population statistics in VCF files with support for varying ploidy and missing data
|
2025-02-09 |
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multiqc
|
public |
Create aggregate bioinformatics analysis reports across many samples and tools.
|
2025-02-09 |
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simpleaf
|
public |
A rust framework to make using alevin-fry even simpler.
|
2025-02-09 |
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confindr
|
public |
Detect intra- and inter-species bacterial contamination in NGS reads.
|
2025-02-07 |
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trgt
|
public |
Tandem repeat genotyping and visualization from PacBio HiFi data
|
2025-02-07 |
|
teloscope
|
public |
A telomere annotation tools for genome assemblies
|
2025-02-07 |
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sanntis
|
public |
SMBGC Annotation using Neural Networks Trained on Interpro Signatures.
|
2025-02-07 |
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varvamp
|
public |
Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses.
|
2025-02-07 |
|
defense-finder
|
public |
Defense Finder: allow for a systematic search of all known anti-phage systems.
|
2025-02-07 |
|
savana
|
public |
SAVANA: a somatic structural variant caller for long-read data
|
2025-02-07 |
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genoflu
|
public |
Influenza data pipeline to automate genotyping assignment.
|
2025-02-07 |
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sylph-tax
|
public |
Integrating taxonomic information into the sylph metagenome profiler.
|
2025-02-07 |
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gw
|
public |
View genomic sequencing data and vcf files
|
2025-02-07 |
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nbitk
|
public |
nbitk: Naturalis BioInformatics ToolKit
|
2025-02-07 |
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perl-mime-types
|
public |
Definition of MIME types
|
2025-02-07 |
