|
maxbin2
|
public |
MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm.
|
2025-09-26 |
|
corset
|
public |
Software for clustering de novo assembled transcripts and counting overlapping reads.
|
2025-09-26 |
|
psiclass
|
public |
Simultaneous multi-sample transcript assembler for RNA-seq data
|
2025-09-26 |
|
ephemeris
|
public |
Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.
|
2025-09-26 |
|
spaln
|
public |
Map and align a set of cDNA/EST or protein sequences onto a genome.
|
2025-09-26 |
|
parnas
|
public |
Representative taxon sampling from phylogenetic trees
|
2025-09-26 |
|
libcifpp
|
public |
Library containing code to manipulate mmCIF and PDB files.
|
2025-09-26 |
|
beacon2-ri-tools
|
public |
Package of tools designed to simplify the population of a Beacon v2 mongoDB database
|
2025-09-26 |
|
wakhan
|
public |
A tool to analyze haplotype-specific chromosome-scale somatic copy number aberrations and aneuploidy using long reads.
|
2025-09-26 |
|
lca
|
public |
LCA - Lowest Common Ancestor calculation tool
|
2025-09-26 |
|
kma
|
public |
KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend.
|
2025-09-26 |
|
lodei
|
public |
Analyze differentially edited A-to-I regions in two sets of RNA-seq samples.
|
2025-09-26 |
|
ensembl-vep
|
public |
Ensembl Variant Effect Predictor
|
2025-09-26 |
|
orthanq
|
public |
Uncertainty aware HLA typing and general haplotype quantification.
|
2025-09-26 |
|
clustalo
|
public |
Latest version of Clustal: a multiple sequence alignment program for DNA or proteins
|
2025-09-26 |
|
mehari
|
public |
VEP-like tool for sequence ontology and HGVS annotation of VCF files written in Rust.
|
2025-09-26 |
|
emboss
|
public |
The European Molecular Biology Open Software Suite
|
2025-09-26 |
|
consel
|
public |
CONSEL calculates the probability value (i.e., p-value) to assess the confidence in the selection problem. Although CONSEL is applicable to any selection problem, it is mainly designed for the phylogenetic tree selection
|
2025-09-26 |
|
pybedlite
|
public |
Lightweight python classes for interfacing with bed intervals.
|
2025-09-26 |
|
pybwa
|
public |
Pybwa is a python module that makes it easy to align sequence data. It is a lightweight wrapper of bwa.
|
2025-09-26 |
|
pm4ngs
|
public |
PM4NGS generates a standard organizational structure for Next Generation Sequencing (ngs) data analysis.
|
2025-09-26 |
|
pharokka
|
public |
Fast Phage Annotation Program
|
2025-09-25 |
|
kmc
|
public |
Tools for efficient k-mer counting and filtering of reads based on k-mer content.
|
2025-09-25 |
|
snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-09-25 |
|
vcfsim
|
public |
Script for generating simulated VCF's leveraging a coalescent simulating backend.
|
2025-09-25 |
