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nanovar
|
public |
Structural variant caller using low-depth long reads
|
2024-09-29 |
|
metabuli
|
public |
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid
|
2024-09-29 |
|
quatradis
|
public |
A set of tools to analyse the output from TraDIS analyses
|
2024-09-29 |
|
genomedata
|
public |
Tools for accessing large amounts of genomic data
|
2024-09-29 |
|
parsnp
|
public |
Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection.
|
2024-09-28 |
|
snakeobjects
|
public |
Snakeobjects, an object-oriented workflow management system based on snakemake
|
2024-09-27 |
|
baltic
|
public |
Lightweight package for analyzing, manipulating and visualizing annotated phylogenetic trees.
|
2024-09-27 |
|
snakemake-executor-plugin-slurm
|
public |
A Snakemake executor plugin for submitting jobs to a SLURM cluster.
|
2024-09-27 |
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consensify
|
public |
A method for generating a consensus pseudohaploid genome sequence
|
2024-09-27 |
|
trgt
|
public |
Tandem repeat genotyping and visualization from PacBio HiFi data
|
2024-09-27 |
|
gbintk
|
public |
GraphBin-Tk: assembly graph-based metagenomic binning toolkit
|
2024-09-27 |
|
giatools
|
public |
Tools required for Galaxy Image Analysis
|
2024-09-27 |
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gempipe
|
public |
gempipe is a tool for the reconstruction of strain-specific genome-scale metabolic models.
|
2024-09-27 |
|
msisensor-pro
|
public |
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
|
2024-09-27 |
|
fast-edit-distance
|
public |
A implementation of edit distance with improved runtime.
|
2024-09-27 |
|
trnascan-se
|
public |
tRNA detection in large-scale genomic sequences
|
2024-09-27 |
|
infernal
|
public |
Infernal is for searching DNA sequence databases for RNA structure and sequence similarities.
|
2024-09-27 |
|
kmertools
|
public |
kmertools: DNA Vectorisation Tool
|
2024-09-27 |
|
straglr
|
public |
Short-tandem repeat genotyping using long reads
|
2024-09-27 |
|
dxpy
|
public |
DNAnexus Platform API bindings for Python
|
2024-09-26 |
|
repic
|
public |
REPIC - an ensemble learning approach to cryo-EM particle picking.
|
2024-09-26 |
|
gget
|
public |
gget enables efficient querying of genomic databases.
|
2024-09-26 |
|
hopla
|
public |
Hopla enables classic genomic single, duo, trio, etc., analysis, by studying a single (multisample) vcf-file
|
2024-09-26 |
|
vsearch
|
public |
A versatile open source tool for metagenomics (USEARCH alternative)
|
2024-09-26 |
|
architeuthis
|
public |
Tool to analyze and summarize data for Kraken.
|
2024-09-26 |
|
stranger
|
public |
Annotate VCF files with str variants
|
2024-09-26 |
|
moni
|
public |
A Pangenomics Index for Finding MEMs
|
2024-09-26 |
|
biobb_structure_checking
|
public |
BioBB_structure_checking performs MDWeb structure checking set as a command line utility.
|
2024-09-26 |
|
metacoag
|
public |
MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
|
2024-09-26 |
|
falco
|
public |
falco is a drop-in C++ implementation of FastQC to assess the quality of sequence reads.
|
2024-09-26 |
|
graphbin2
|
public |
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
|
2024-09-26 |
|
squigulator
|
public |
A tool for simulating nanopore raw signal data
|
2024-09-26 |
|
abnumber
|
public |
AbNumber - Antibody numbering using ANARCI
|
2024-09-25 |
|
vsnp3
|
public |
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
|
2024-09-25 |
|
severus
|
public |
A tool for somatic structural variant calling using long reads
|
2024-09-25 |
|
srnamapper
|
public |
Mapping small RNA data to a genome.
|
2024-09-25 |
|
ampliconsuite
|
public |
An end-to-end wrapper for focal amplification analysis from whole-genome sequencing using AmpliconArchitect and associated tools.
|
2024-09-25 |
|
galaxy-data
|
public |
The Galaxy models, datatype framework, and datatype implementations.
|
2024-09-25 |
|
galaxy-schema
|
public |
The Galaxy API schema objects.
|
2024-09-25 |
|
galaxy-files
|
public |
The Galaxy file sources framework and default plugins.
|
2024-09-25 |
|
galaxy-objectstore
|
public |
The Galaxy object store framework and default implementations
|
2024-09-25 |
|
ska2
|
public |
SKA (Split Kmer Analysis) version 2
|
2024-09-25 |
|
smudgeplot
|
public |
Inference of ploidy and heterozygosity structure using whole genome sequencing data.
|
2024-09-25 |
|
ena-upload-cli
|
public |
Command Line Interface to upload data to the European Nucleotide Archive
|
2024-09-25 |
|
isoquant
|
public |
IsoQuant is a tool for reference-based analysis of long RNA reads, such as gene/transcript quantification and discovery.
|
2024-09-25 |
|
snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2024-09-25 |
|
snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2024-09-25 |
|
hiphase
|
public |
Small and structural variant phasing tool for PacBio HiFi reads
|
2024-09-25 |
|
earlgrey
|
public |
Earl Grey: A fully automated TE curation and annotation pipeline
|
2024-09-25 |
|
fiji-simple_omero_client
|
public |
Java library to simplify API to put/get objects on an OMERO server from Fiji/ImageJ.
|
2024-09-25 |
