|
dfast
|
public |
DDBJ Fast Annotation and Submission Tool - Prokaryotic genome annotation pipeline
|
2025-01-07 |
|
vsearch
|
public |
A versatile open source tool for metagenomics (USEARCH alternative)
|
2025-01-07 |
|
jbrowse2
|
public |
The JBrowse 2 Genome Browser
|
2025-01-07 |
|
centrifuger
|
public |
Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.
|
2025-01-07 |
|
metabuli
|
public |
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid
|
2025-01-07 |
|
stacks
|
public |
Stacks is a software pipeline for building loci from short-read sequences.
|
2025-01-07 |
|
sdm
|
public |
sdm - simple demultiplex tool for FASTQ demultiplexing and dereplication
|
2025-01-07 |
|
strobealign
|
public |
Align short reads using dynamic seed size with strobemers
|
2025-01-07 |
|
proteinortho
|
public |
Proteinortho is a tool to detect orthologous genes within different species.
|
2025-01-07 |
|
gzrt
|
public |
Unofficial build of the gzip Recovery Toolkit aka gzrecover.
|
2025-01-07 |
|
hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
|
2025-01-07 |
|
r-oncopharmadb
|
public |
Targeted and non-targeted anticancer drugs and drug regimens
|
2025-01-07 |
|
methylmap
|
public |
Plotting tool for population-scale nucleotide modifications
|
2025-01-07 |
|
seq2squiggle
|
public |
End-to-end simulation of nanopore sequencing signals with feed-forward transformers
|
2025-01-07 |
|
pylipid
|
public |
PyLipID - A Python Library For Lipid Interaction Analysis
|
2025-01-07 |
|
megahit
|
public |
MEGAHIT: An ultra-fast single-node solution for large and complex
metagenomics assembly via succinct de Bruijn graph
|
2025-01-07 |
|
binette
|
public |
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
|
2025-01-07 |
|
divvier
|
public |
A program for removing MSA uncertainty
|
2025-01-07 |
|
kneaddata
|
public |
KneadData is a tool designed to perform quality control on metagenomic sequencing data.
|
2025-01-07 |
|
wgdi
|
public |
Whole Genome Duplication Identification.
|
2025-01-07 |
|
nanovar
|
public |
Structural variant caller using low-depth long reads
|
2025-01-07 |
|
stringtie
|
public |
StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome.
|
2025-01-07 |
|
bioconductor-zenith
|
public |
Gene set analysis following differential expression using linear (mixed) modeling with dream
|
2025-01-06 |
|
fasten
|
public |
Perform random operations on fastq files, using unix streaming. Secure your analysis with Fasten!
|
2025-01-06 |
|
bioconductor-variancepartition
|
public |
Quantify and interpret drivers of variation in multilevel gene expression experiments
|
2025-01-06 |
|
unifeb
|
public |
unifeb is an non-linear dimension reduction/embedding algorithm for UniFrac distance. It is ultra-fast and scalable.
|
2025-01-06 |
|
bioconductor-limma
|
public |
Linear Models for Microarray and Omics Data
|
2025-01-06 |
|
strangepg
|
public |
Strange pangenome-scale interactive graph visualizer
|
2025-01-06 |
|
bioconda-utils
|
public |
Utilities for building and managing bioconda recipes.
|
2025-01-06 |
|
ipyrad
|
public |
Interactive assembly and analysis of RAD-seq data sets.
|
2025-01-06 |
|
artic
|
public |
ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore.
|
2025-01-06 |
|
bioconductor-ideal
|
public |
Interactive Differential Expression AnaLysis
|
2025-01-06 |
|
bioconductor-manor
|
public |
CGH Micro-Array NORmalization
|
2025-01-06 |
|
dockq
|
public |
A Quality Measure for Protein, Nucleic Acids and Small Ligand Docking Modelsc
|
2025-01-06 |
|
bioconductor-glad
|
public |
Gain and Loss Analysis of DNA
|
2025-01-06 |
|
pyfastx
|
public |
pyfastx is a python module for fast random
access to sequences from plain and gzipped
FASTA/Q file
|
2025-01-06 |
|
longcallr_nn
|
public |
longcallR_nn is a variant caller specifically designed for long-read RNA-seq data utilizing a ResNet model.
|
2025-01-06 |
|
bioconductor-spatiallibd
|
public |
spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data
|
2025-01-05 |
|
bioconductor-visse
|
public |
Visualising Set Enrichment Analysis Results
|
2025-01-05 |
|
bioconductor-splicewiz
|
public |
interactive analysis and visualization of alternative splicing in R
|
2025-01-05 |
|
phyclone
|
public |
Accurate Bayesian reconstruction of cancer phylogenies from bulk sequencing.
|
2025-01-05 |
|
bioconductor-data-packages
|
public |
A package to enable downloading and installation of Bioconductor data packages
|
2025-01-05 |
|
bioconductor-primirtss
|
public |
Prediction of pri-miRNA Transcription Start Site
|
2025-01-05 |
|
bioconductor-scfeatures
|
public |
scFeatures: Multi-view representations of single-cell and spatial data for disease outcome prediction
|
2025-01-05 |
|
bioconductor-moonlight2r
|
public |
Identify oncogenes and tumor suppressor genes from omics data
|
2025-01-05 |
|
bioconductor-epimutacions
|
public |
Robust outlier identification for DNA methylation data
|
2025-01-05 |
|
bioconductor-inetgrate
|
public |
Integrates DNA methylation data with gene expression in a single gene network
|
2025-01-05 |
|
bioconductor-mosdef
|
public |
MOSt frequently used and useful Differential Expression Functions
|
2025-01-05 |
|
bioconductor-methylcc
|
public |
Estimate the cell composition of whole blood in DNA methylation samples
|
2025-01-05 |
|
bioconductor-mafdb.exac.r1.0.grch38
|
public |
Minor allele frequency data from ExAC release 1.0 for GRCh38
|
2025-01-05 |
