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unetcoreograph
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public |
UNetCoreograph - Automated segmentation of nuclei in 3D imaging data.
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2025-09-07 |
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pear
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public |
paired-end read merger
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2025-09-07 |
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mgikit
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public |
mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
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2025-09-07 |
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sawfish
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public |
Joint structural variant and copy number variant caller for HiFi sequencing data
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2025-09-07 |
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igv
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public |
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics
data and annotations.
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2025-09-07 |
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multiqc
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public |
Create aggregate bioinformatics analysis reports across many samples and tools.
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2025-09-06 |
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auspice
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public |
Auspice is an open-source interactive tool for visualising phylogenomic data
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2025-09-06 |
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methbat
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public |
A battery of methylation tools for PacBio HiFi reads
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2025-09-05 |
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mageck
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public |
MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout), an algorithm to process, QC, analyze and visualize CRISPR screening data.
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2025-09-05 |
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pqlseqpy
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public |
Fast PQLseq in Python
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2025-09-05 |
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bird_tool_utils_python
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public |
Python utilities used as part of the bird suite of bioinformatic tools.
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2025-09-05 |
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cascade-reg
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public |
Causal discovery of gene regulatory programs from single-cell genomics
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2025-09-05 |
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afpdb
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public |
A Numpy-based PDB structure manipulation package
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2025-09-05 |
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gsalign
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public |
GSAlign: an ultra-fast sequence alignment tool
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2025-09-05 |
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scalpel
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public |
Sensitive detection of INDELs (INsertions and DELetions)
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2025-09-04 |
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galah
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public |
Galah aims to be a more scalable metagenome assembled genome (MAG) dereplication method.
|
2025-09-04 |
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variant_tools
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public |
Integrated annotation and analysis of next gen sequencing data
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2025-09-04 |
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hgvs
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public |
HGVS Parser, Formatter, Mapper, and Validator.
|
2025-09-04 |
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peregrine-2021
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public |
A genome assembler designed for long-reads that have good enough accuracy
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2025-09-04 |
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primalbedtools
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public |
A collection of tools for working with primer.bed files.
|
2025-09-04 |
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iseq
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public |
iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
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2025-09-04 |
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mess
|
public |
Snakemake pipeline for simulating shotgun metagenomic samples
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2025-09-04 |
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peptides
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public |
Physicochemical properties, indices and descriptors for amino-acid sequences.
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2025-09-04 |
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hostile
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public |
Hostile: accurate host decontamination.
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2025-09-04 |
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r-dartr
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public |
Functions are provided that facilitate the import and analysis of SNP (single nucleotide polymorphism) and silicodart (presence/absence) data. The main focus is on data generated by DarT (Diversity Arrays Technology). However, once SNP or related fragment presence/absence data from any source is imported into a genlight object many of the functions can be used. Functions are available for input and output of SNP and silicodart data, for reporting on and filtering on various criteria (e.g. CallRate, Heterozygosity, Reproducibility, maximum allele frequency). Advanced filtering is based on Linkage Disequilibrium and HWE (Hardy-Weinberg equilibrium). Other functions are available for visualization after PCoA (Principle Coordinate Analysis), or to facilitate transfer of data between genlight/genind objects and newhybrids, related, phylip, structure, faststructure packages.
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2025-09-04 |
