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bambamc
|
public |
lightweight C implementation of name collating BAM file input and BAM file output
|
2024-10-02 |
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open-cravat
|
public |
OpenCRAVAT - variant analysis toolkit
|
2024-10-01 |
|
python-hivclustering
|
public |
A Python 3 library that makes inferences on HIV-1 transmission networks.
|
2024-10-01 |
|
genomic_address_service
|
public |
Genomic Address Service: De novo clustering and cluster address assignment
|
2024-10-01 |
|
eukulele
|
public |
Easy taxonomic annotation for eukaryotic microbes.
|
2024-10-01 |
|
peptide-shaker
|
public |
Independent platform for interpretation of proteomics identification results.
|
2024-10-01 |
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searchgui
|
public |
User-friendly graphical tool for using proteomics identification search engines.
|
2024-10-01 |
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minimizers
|
public |
Minimizers extraction from fasta files.
|
2024-10-01 |
|
sphae
|
public |
Phage toolkit
|
2024-10-01 |
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olivar
|
public |
Olivar PCR tiling design
|
2024-10-01 |
|
dbghaplo
|
public |
Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn Graph.
|
2024-09-30 |
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yahs
|
public |
YaHS, yet another Hi-C scaffolding tool.
|
2024-09-30 |
|
catfasta2phyml
|
public |
Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
|
2024-09-30 |
|
spreadgltools
|
public |
Visualising pathogen dispersal in a high-performance browser application
|
2024-09-30 |
|
slow5tools
|
public |
Toolkit for S/bLOW5 format
|
2024-09-30 |
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agfusion
|
public |
Python package to annotate and visualize gene fusions.
|
2024-09-30 |
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r-diffcorr
|
public |
A method for identifying pattern changes between 2 experimental conditions in correlation networks (e.g., gene co-expression networks), which builds on a commonly used association measure, such as Pearson's correlation coefficient. This package includes functions to calculate correlation matrices for high-dimensional dataset and to test differential correlation, which means the changes in the correlation relationship among variables (e.g., genes and metabolites) between 2 experimental conditions.
|
2024-09-30 |
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ont-modkit
|
public |
A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.
|
2024-09-29 |
|
nanovar
|
public |
Structural variant caller using low-depth long reads
|
2024-09-29 |
|
metabuli
|
public |
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid
|
2024-09-29 |
|
quatradis
|
public |
A set of tools to analyse the output from TraDIS analyses
|
2024-09-29 |
|
genomedata
|
public |
Tools for accessing large amounts of genomic data
|
2024-09-29 |
|
snakeobjects
|
public |
Snakeobjects, an object-oriented workflow management system based on snakemake
|
2024-09-27 |
|
baltic
|
public |
Lightweight package for analyzing, manipulating and visualizing annotated phylogenetic trees.
|
2024-09-27 |
|
consensify
|
public |
A method for generating a consensus pseudohaploid genome sequence
|
2024-09-27 |
|
gbintk
|
public |
GraphBin-Tk: assembly graph-based metagenomic binning toolkit
|
2024-09-27 |
|
giatools
|
public |
Tools required for Galaxy Image Analysis
|
2024-09-27 |
|
msisensor-pro
|
public |
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
|
2024-09-27 |
|
fast-edit-distance
|
public |
A implementation of edit distance with improved runtime.
|
2024-09-27 |
|
trnascan-se
|
public |
tRNA detection in large-scale genomic sequences
|
2024-09-27 |
|
infernal
|
public |
Infernal is for searching DNA sequence databases for RNA structure and sequence similarities.
|
2024-09-27 |
|
kmertools
|
public |
kmertools: DNA Vectorisation Tool
|
2024-09-27 |
|
repic
|
public |
REPIC - an ensemble learning approach to cryo-EM particle picking.
|
2024-09-26 |
|
gget
|
public |
gget enables efficient querying of genomic databases.
|
2024-09-26 |
|
hopla
|
public |
Hopla enables classic genomic single, duo, trio, etc., analysis, by studying a single (multisample) vcf-file
|
2024-09-26 |
|
architeuthis
|
public |
Tool to analyze and summarize data for Kraken.
|
2024-09-26 |
|
moni
|
public |
A Pangenomics Index for Finding MEMs
|
2024-09-26 |
|
biobb_structure_checking
|
public |
BioBB_structure_checking performs MDWeb structure checking set as a command line utility.
|
2024-09-26 |
|
metacoag
|
public |
MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
|
2024-09-26 |
|
falco
|
public |
falco is a drop-in C++ implementation of FastQC to assess the quality of sequence reads.
|
2024-09-26 |
|
graphbin2
|
public |
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
|
2024-09-26 |
|
squigulator
|
public |
A tool for simulating nanopore raw signal data
|
2024-09-26 |
|
abnumber
|
public |
AbNumber - Antibody numbering using ANARCI
|
2024-09-25 |
|
vsnp3
|
public |
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
|
2024-09-25 |
|
severus
|
public |
A tool for somatic structural variant calling using long reads
|
2024-09-25 |
|
srnamapper
|
public |
Mapping small RNA data to a genome.
|
2024-09-25 |
|
ampliconsuite
|
public |
An end-to-end wrapper for focal amplification analysis from whole-genome sequencing using AmpliconArchitect and associated tools.
|
2024-09-25 |
|
ska2
|
public |
SKA (Split Kmer Analysis) version 2
|
2024-09-25 |
|
ena-upload-cli
|
public |
Command Line Interface to upload data to the European Nucleotide Archive
|
2024-09-25 |
|
hiphase
|
public |
Small and structural variant phasing tool for PacBio HiFi reads
|
2024-09-25 |
