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ggd
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public |
GoGetData (GGD) is a genomic data managment system. It provide simple and reproducible access to a repository of genomic data. Simply put, it is 'Conda' for genomic data
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2023-06-16 |
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bioconductor-gramm4r
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public |
Generalized correlation analysis and model construction strategy for metabolome and microbiome
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2023-06-16 |
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bioconductor-sojourner
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public |
Statistical analysis of single molecule trajectories
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2023-06-16 |
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garnett-cli
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public |
Collection of wrapper scripts for the Garnett scRNAseq cell type classification tool.
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2023-06-16 |
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bioconductor-aspediafi
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public |
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events
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2023-06-16 |
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ncbi-acc-download
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public |
Download files from NCBI Entrez by accession.
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2023-06-16 |
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refgenconf
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public |
A standardized configuration object for reference genome assemblies
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2023-06-16 |
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bioconductor-alps
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public |
AnaLysis routines for ePigenomicS data
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2023-06-16 |
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borf
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public |
ORF predictions from .fa files
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2023-06-16 |
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bioconductor-methcp
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public |
Differential methylation anlsysis for bisulfite sequencing data
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2023-06-16 |
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pb-falcon-phase
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public |
Non-python parts of falcon-phase (Pacific Biosciences)
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2023-06-16 |
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bioconductor-xcir
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public |
XCI-inference
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2023-06-16 |
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bioconductor-autotuner
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public |
Automated parameter selection for untargeted metabolomics data processing
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2023-06-16 |
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bioconductor-pulsedsilac
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public |
Analysis of pulsed-SILAC quantitative proteomics data
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2023-06-16 |
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bam2fasta
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public |
bam2fasta: cli tool to convert bam to fastas
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2023-06-16 |
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bioconductor-crossicc
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public |
An Interactive Consensus Clustering Framework for Multi-platform Data Analysis
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2023-06-16 |
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bioconductor-flowspy
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public |
A Toolkit for Flow And Mass Cytometry Data
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2023-06-16 |
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bioconductor-hcaexplorer
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public |
Browse the Human Cell Atlas data portal
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2023-06-16 |
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r-eacon
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public |
Easy Copy Number. EaCoN aims to be an all-packed in, user-friendly solution to perform relative or absolute copy-number analysis for multiple sources of data, with three different segmenters available (and corresponding three copy-number modelization methods)
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2023-06-16 |
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perl-obogaf-parser
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public |
a perl5 module to handle obo and gaf file
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2023-06-16 |
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rilseq
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public |
Processing RILSeq experiments results
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2023-06-16 |
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vibrant
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public |
Virus Identification By iteRative ANnoTation
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2023-06-16 |
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optimir
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public |
Integrating genetic variations in miRNA alignment
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2023-06-16 |
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biasaway
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public |
BiasAway: a tool to generate composition-matched background sequences
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2023-06-16 |
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variant_tools
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public |
Integrated annotation and analysis of next gen sequencing data
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2023-06-16 |
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count_constant_sites
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public |
Compute the count of cases in constant sites in a (FASTA) multiple sequence alignment
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2023-06-16 |
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clsify
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public |
Haplotyping of C. Liberibacter solanacearum from Sanger data.
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2023-06-16 |
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mango
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public |
A scalable genomic visualization tool
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2023-06-16 |
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tetyper
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public |
Typing of a specific transposable element (TE) of interest from paired-end sequencing data.
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2023-06-16 |
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graph-boink
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public |
streaming de Bruijn graph compaction and sketching.
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2023-06-16 |
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jpredapi
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public |
Python library for submitting jobs to JPRED - A Protein Secondary Structure Prediction Server
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2023-06-16 |
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kmasker
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public |
A tool for masking and exploring of sequences from plant species.
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2023-06-16 |
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danpos
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public |
A toolkit for Dynamic Analysis of Nucleosome and Protein Occupancy by Sequencing, version 2
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2023-06-16 |
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decoypyrat
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public |
Fast Hybrid Decoy Sequence Database Creation for Proteomic Mass Spectrometery Analyses
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2023-06-16 |
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bwise
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public |
BWISE is a de Bruijn assembly Workflow using Integral information of Short paired-End reads
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2023-06-16 |
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croo
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public |
CRomwell Output Organizer
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2023-06-16 |
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popscle
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public |
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
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2023-06-16 |
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bel-resources
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public |
Utilities for BEL resource files.
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2023-06-16 |
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caper
|
public |
Cromwell Assisted Pipeline ExecutoR
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2023-06-16 |
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chromatiblock
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public |
Scalable, whole-genome visualisation of structural changes in prokaryotes.
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2023-06-16 |
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fastalite
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public |
Simplest possible fasta parser
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2023-06-16 |
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req
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public |
Estimating the rate of elementary quartets (REQ) of each internal branch of a phylogenetic tree from a distance matrix
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2023-06-16 |
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rmetl
|
public |
rMETL is a realignment-based Mobile Element insertion detection Tool for Long read
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2023-06-16 |
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chexmix
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public |
ChExMix aims to characterize protein-DNA binding subtypes in ChIP-exo experiments. ChExMix assumes that different regulatory complexes will result in different protein-DNA crosslinking signatures in ChIP-exo data, and thus analysis of ChIP-exo sequencing tag patterns should enable detection of multiple protein-DNA binding modes for a given regulatory protein. ChExMix uses a mixture modeling framework to probabilistically model the genomic locations and subtype membership of protein-DNA binding events, leveraging both ChIP-exo tag enrichment patterns and DNA sequence information. In doing so, ChExMix offers a more principled and robust approach to characterizing binding subtypes than simply clustering binding events using motif information.
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2023-06-16 |
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cvbio
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public |
Tools for working with genomic and sequencing data, including multi-species read disambiguation
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2023-06-16 |
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jass_preprocessing
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public |
Harmonizing raw GWAS summary statistic for further analysis with jass
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2023-06-16 |
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ratt
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public |
Rapid Annotation Transfer Tool
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2023-06-16 |
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multivcfanalyzer
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public |
MultiVCFAnalyzer is a VCF file post-processing tool tailored for aDNA. License on Github repository.
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2023-06-16 |
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pirate
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public |
Pangenome analysis and threshold evaluation toolbox
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2023-06-16 |
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quasirecomb
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public |
Software of Inference of Quasispecies subjected to Recombination
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2023-06-16 |
