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perl-gd-svg
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public |
Seamlessly enable SVG output from scripts written using GD
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2023-06-16 |
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kcalign
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public |
Kalgin-based codon-aware aligner for multiple sequences
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2023-06-16 |
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readucks
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public |
Readucks: a simple demultiplexer for nanopore reads
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2023-06-16 |
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riboseqc
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public |
Read length specific QC of Ribo-seq data
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2023-06-16 |
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rkp
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public |
Relative K-mer Project
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2023-06-16 |
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r-transphylo
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public |
Reconstruction of transmission trees using genomic data
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2023-06-16 |
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rnabloom
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public |
Java tool for RNA-seq assembly
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2023-06-16 |
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yapc
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public |
Yapc is a (yet another) peak caller for genomic high-throughput sequencing data
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2023-06-16 |
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tadbit
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public |
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data.
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2023-06-16 |
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callstate
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public |
A replacement for GATK3 CallableLoci
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2023-06-16 |
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coral
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public |
Coral is an efficient tool to bridge paire-end RNA-seq reads.
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2023-06-16 |
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sigmut
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public |
Wrapper of SigProfiler (Copyright(c) 2019, Erik Bergstrom [Alexandrov Lab])
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2023-06-16 |
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sicer2
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public |
Redesigned and improved ChIP-seq broad peak calling tool SICER.
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2023-06-16 |
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pyslim
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public |
Manipulate tree sequences produced by SLiM.
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2023-06-16 |
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pgx-pipe-helper
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public |
A helper module for wrapping functionality which is common to all pipeline stages.
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2023-06-16 |
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phylics
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public |
Single-cell CNV data analysis toolkit
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2023-06-16 |
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phastaf
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public |
Identify phage regions in bacterial genomes for masking purposes
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2023-06-16 |
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conterminator
|
public |
Conterminator: software to detect contamination in large sequence sets
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2023-06-16 |
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pgx-variant-tools
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public |
This library contains various methods and utilities for the calling and manipulation of normalized variants.
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2023-06-16 |
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enrichm
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public |
EnrichM is a toolbox for comparing the functional composition of population genomes
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2023-06-16 |
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kofamscan
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public |
KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH against KOfam
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2023-06-16 |
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galaxy-util
|
public |
Galaxy Generic Utilities
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2023-06-16 |
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galaxy-tool-util
|
public |
Galaxy Tool and Tool Dependency Utilities
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2023-06-16 |
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galaxy-containers
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public |
Galaxy Container Modeling and Interaction Abstractions
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2023-06-16 |
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r-qtl2
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public |
R/qtl2 provides a set of tools to perform quantitative trait locus (QTL) analysis in experimental crosses. It is a reimplementation of the R/qtl package to better handle high-dimensional data and complex cross designs. This package is designed to make it easy to install and load multiple R/qtl2 packages in a single step. Broman et al. (2018) <doi:10.1534/genetics.118.301595>.
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2023-06-16 |
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crisprbact
|
public |
Tools to design and analyse CRISPRi experiments
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2023-06-16 |
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perl-text-csv_xs
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public |
Text::CSV_XS - comma-separated values manipulation routines
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2023-06-16 |
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clan
|
public |
CLAN - the CrossLinked reads ANalysis tool
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2023-06-16 |
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vsnp
|
public |
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
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2023-06-16 |
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chira
|
public |
An integrated framework for annotation and visualization of chimeric reads.
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2023-06-16 |
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locus_processing
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public |
Tools for working with locus definition files
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2023-06-16 |
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pp-sketchlib
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public |
Library of sketching functions used by PopPUNK
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2023-06-16 |
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quantwiz-iq
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public |
QuantWiz-IQ is a tool for reporter based MS/MS quantitation using iTRAQ or TMT tags from shotgun proteomics experiments.
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2023-06-16 |
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biotdg
|
public |
Bioinformatics Test Data Generator
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2023-06-16 |
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imsindel
|
public |
An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis
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2023-06-16 |
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chromosight
|
public |
Detect loops (and other patterns) in Hi-C contact maps.
|
2023-06-16 |
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interleafq
|
public |
Interleave and deinterleave FASTQ files
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2023-06-16 |
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shannon_cpp
|
public |
shannon_cpp is command line tool for denovo rna assembly
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2023-06-16 |
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hypo
|
public |
Super Fast and Accurate Polisher for Long Read Genome Assemblies.
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2023-06-16 |
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libis
|
public |
Low input Bisulfite sequencing alignment
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2023-06-16 |
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rsat-core
|
public |
Detection of regulatory signals in non-coding sequences.
|
2023-06-16 |
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haploconduct
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public |
HaploConduct is a package designed for reconstruction of individual haplotypes from next generation sequencing data, in particular Illumina. It provides two methods, SAVAGE and POLYTE, which can be run through the haploconduct wrapper.
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2023-06-16 |
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perl-math-matrixreal
|
public |
Manipulate NxN matrices of real numbers
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2023-06-16 |
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perl-math-matrix
|
public |
Multiply and invert Matrices
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2023-06-16 |
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cameo
|
public |
cameo - computer aided metabolic engineering & optimization
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2023-06-16 |
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openms-tools
|
public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses
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2023-06-16 |
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luciphor2
|
public |
Luciphor2 performs PTM-site localization on MS/MS data
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2023-06-16 |
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libis_moabs
|
public |
Low input Bisulfite sequencing alignment
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2023-06-16 |
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ncbimeta
|
public |
Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).
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2023-06-16 |
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hypercluster
|
public |
A package for automatic clustering hyperparameter optmization
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2023-06-16 |
