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seqchromloader
|
public |
Sequence and chromatin dataloader for deep learning
|
2024-09-09 |
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graphmap
|
public |
A highly sensitive and accurate mapper for long, error-prone reads
|
2024-09-09 |
|
snakemake-executor-plugin-drmaa
|
public |
A snakemake executor plugin for submission of jobs via DRMAA.
|
2024-09-09 |
|
scnic
|
public |
SCNIC: Sparse Cooccurence Network Investigation for Compositional data
|
2024-09-06 |
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annonars
|
public |
Genome annotation based on Rust and RocksDB.
|
2024-09-06 |
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cami-amber
|
public |
AMBER: Assessment of Metagenome BinnERs
|
2024-09-06 |
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shorttracks
|
public |
ShortTracks : Useful length- and strand-based coverage files (bigwig) from small RNA-seq alignments (BAM)
|
2024-09-05 |
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strucvis
|
public |
strucVis : Display small RNA depth of coverage on a predicted RNA secondary structure
|
2024-09-05 |
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starcatpy
|
public |
Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs.
|
2024-09-05 |
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handyreadgenotyper
|
public |
Tool for training model and classifying reads from environmental ONT amplicon sequencing.
|
2024-09-05 |
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annotsv
|
public |
Annotation and Ranking of Structural Variation
|
2024-09-05 |
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allo
|
public |
Multi-mapped read rescue strategy for gene regulatory analyses
|
2024-09-05 |
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clipandmerge
|
public |
Clip&Merge is a tool to clip off adapters from sequencing reads and merge overlapping paired end reads together.
|
2024-09-05 |
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dedup
|
public |
DeDup is a tool for read deduplication in paired-end read merging (e.g. for ancient DNA experiments).
|
2024-09-05 |
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bcbio-gff
|
public |
A Python library to read and write Generic Feature Format (GFF).
|
2024-09-05 |
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beacon2-import
|
public |
Seamlessly import and query genomic variant data from a beacon
|
2024-09-04 |
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jvarkit
|
public |
Java utilities for Bioinformatics.
|
2024-09-03 |
|
mehari
|
public |
VEP-like tool for sequence ontology and HGVS annotation of VCF files written in Rust.
|
2024-09-03 |
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beav
|
public |
beav: Bacterial genome and mobile element annotation pipeline
|
2024-09-02 |
|
wfmash
|
public |
a pangenome-scale aligner
|
2024-09-02 |
|
blast2galaxy
|
public |
A Python package with a CLI and API to perform BLAST queries against Galaxy servers
|
2024-09-02 |
|
dbcanlight
|
public |
A lightweight CAZyme annotation tool
|
2024-08-30 |
|
samestr
|
public |
SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
|
2024-08-30 |
|
ezomero
|
public |
A module with convenience functions for writing Python code that interacts with OMERO
|
2024-08-30 |
|
inspector
|
public |
Accurate long-read de novo assembly evaluation with Inspector
|
2024-08-30 |
|
kegalign-full
|
public |
KegAlign: A Scalable GPU-Based Whole Genome Aligner
|
2024-08-29 |
|
cnmf
|
public |
Consensus NMF for scRNA-Seq data.
|
2024-08-29 |
|
anndata2ri
|
public |
Convert between AnnData and SingleCellExperiment
|
2024-08-29 |
|
wisecondorx
|
public |
WIthin-SamplE COpy Number aberration DetectOR, including sex chromosomes
|
2024-08-29 |
|
pango-collapse
|
public |
Collapse Pango sublineages up to user defined parent lineages.
|
2024-08-29 |
|
pygcap
|
public |
Python package for probe-based gene cluster finding in large microbial genome database.
|
2024-08-28 |
|
maegatk
|
public |
Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
|
2024-08-27 |
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argnorm
|
public |
Normalize antibiotic resistance genes (ARGs) abundance tables (e.g., from metagenomics) by using the ARO ontology (developed by CARD).
|
2024-08-26 |
|
metav
|
public |
Rapid detection and classification of viruses in metagenomics sequencing.
|
2024-08-26 |
|
perl-parallel-forkmanager
|
public |
A simple parallel processing fork manager
|
2024-08-26 |
|
jclusterfunk
|
public |
A command line tool with a bunch of functions for trees
|
2024-08-26 |
|
pasty
|
public |
A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
|
2024-08-26 |
|
itolapi
|
public |
API for interacting with itol.embl.de
|
2024-08-26 |
|
sccmec
|
public |
A tool for typing SCCmec cassettes in assemblies
|
2024-08-25 |
|
camlhmp
|
public |
Classification through yAML Heuristic Mapping Protocol
|
2024-08-25 |
|
pling
|
public |
Pling computes the rearrangement distance between plasmids and clusters on their basis
|
2024-08-24 |
|
gxformat2
|
public |
Galaxy Workflow Format 2 Descriptions
|
2024-08-23 |
|
bpipe
|
public |
Bpipe - a tool for running and managing bioinformatics pipelines
|
2024-08-23 |
|
mimsi
|
public |
A Deep Mulitple Instance Learning Classifier for Microsatellite Instability
|
2024-08-22 |
|
popoolation2
|
public |
PoPoolation2 allows to compare allele frequencies for SNPs between two or more populations and to identify significant differences.
|
2024-08-22 |
|
snakemake-executor-plugin-tes
|
public |
A Snakemake executor plugin for submitting jobs to a GA4GH TES cluster.
|
2024-08-22 |
|
pathogen-embed
|
public |
Create reduced dimension embeddings for pathogen sequences
|
2024-08-22 |
|
sigprofilerassignment
|
public |
SigProfilerAssignment - Assignment of known mutational signatures to individual samples and individual somatic mutations
|
2024-08-22 |
|
pyseer
|
public |
Sequence Element Enrichment Analysis (SEER), python implementation
|
2024-08-22 |
|
cami-opal
|
public |
OPAL assesses and compares the performance of taxonomic metagenome profilers.
|
2024-08-21 |
