| Package Name | Access | Summary | Updated |
|---|---|---|---|
| gmm-demux | public | GMM-Demux is a Gaussian-Mixture-Model-based software for processing sample barcoding data (cell hashing and MULTI-seq). | 2025-04-22 |
| ntroot | public | Ancestry inference from genomic data | 2025-04-22 |
| primerforge | public | primerForge: software to identify primers that can be used to distinguish genomes. | 2025-04-22 |
| treeqmc | public | TREE-QMC is a quartet-based method for estimating species trees from gene trees. | 2025-04-22 |
| lemur | public | Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets | 2025-04-22 |
| handyreadgenotyper | public | Tool for training model and classifying reads from environmental ONT amplicon sequencing. | 2025-04-22 |
| reviewer | public | A tool for visualizing alignments of reads in regions containing tandem repeats | 2025-04-22 |
| tree-qmc | public | TREE-QMC is a quartet-based method for estimating species trees from gene trees. | 2025-04-22 |
| hairsplitter | public | Recovers collapsed haplotypes from a draft assembly and long reads | 2025-04-22 |
| scsplit | public | Genotype-free demultiplexing of pooled single-cell RNA-Seq | 2025-04-22 |
| biocamlib | public | An OCaml foundation upon which a number of the bioinformatics tools are built. | 2025-04-22 |
| campygstyper | public | Accurate assignment of ANI genomic species to Campylobacter genomes. | 2025-04-22 |
| favites_lite | public | FAVITES-Lite: A lightweight framework for viral transmission and evolution simulation | 2025-04-22 |
| niemagraphgen | public | Niema's C++ implementations of graph generators | 2025-04-22 |
| gemf_favites | public | User-friendly epidemic simulations | 2025-04-22 |
| treesap | public | TreeSAP: Tree SAmpling under Phylogenetic models | 2025-04-22 |
| snakemake-executor-plugin-lsf | public | A Snakemake executor plugin for submitting jobs to a LSF cluster. | 2025-04-22 |
| snakemake-executor-plugin-lsf-jobstep | public | A Snakemake executor plugin for running bjobs jobs inside of LSF jobs (meant for internal use by snakemake-executor-plugin-lsf) | 2025-04-22 |
| orientationpy | public | OrientationPy is the pythonic successor to the well-loved OrientationJ Fiji Plugin. It is a library that takes in 2D images or 3D volumes and computes the orientation of the greylevels. | 2025-04-22 |
| merge-gbk-records | public | Turn multiple GenBank records (either in multiple files or a single multi-record file) into a single record | 2025-04-22 |
| robust-bias-aware | public | Robust bias aware. | 2025-04-22 |
| cutefc | public | Regenotyping structural variants through an accurate and efficient force-calling method | 2025-04-22 |
| architeuthis | public | Tool to analyze and summarize data for Kraken. | 2025-04-22 |
| pybarrnap | public | Python implementation of barrnap (Bacterial ribosomal RNA predictor). | 2025-04-22 |
| ribotools | public | Ribo-seq analysis tools associated with the Rp-Bp package and more | 2025-04-22 |
