|
meryl
|
public |
No Summary
|
2024-12-13 |
|
mmannot
|
public |
mmannot annotates reads, or quantifies the features. mmmannot takes special care of multi-mapping reads.
|
2024-12-13 |
|
pretextgraph
|
public |
Embeds bedgraph data into Pretext contact maps.
|
2024-12-13 |
|
ska
|
public |
SKA (Split Kmer Analysis)
|
2024-12-13 |
|
coils
|
public |
A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation.
|
2024-12-13 |
|
ucsc-dbsnoop
|
public |
Produce an overview of a database.
|
2024-12-13 |
|
fmlrc
|
public |
A long-read error correction tool using the multi-string Burrows Wheeler Transform
|
2024-12-13 |
|
estscan
|
public |
No Summary
|
2024-12-13 |
|
get_orfs
|
public |
Fast extraction of ORFs in all possible translation tables
|
2024-12-13 |
|
ucsc-linestora
|
public |
generate .ra format from lines with pipe-separated fields
|
2024-12-13 |
|
phynder
|
public |
Efficient likelihood calculations to place samples into a phylogenetic tree.
|
2024-12-13 |
|
ucsc-stringify
|
public |
Convert file to C strings.
|
2024-12-13 |
|
vdjer
|
public |
B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data
|
2024-12-13 |
|
perl-socket6
|
public |
IPv6 related part of the C socket.h defines and structure manipulators
|
2024-12-13 |
|
ucsc-bigpsltopsl
|
public |
convert bigPsl file to psl
|
2024-12-13 |
|
w4mclassfilter
|
public |
Filter Workflow4Metabolomics feature list, optionally imputing NA values.
|
2024-12-13 |
|
sctools
|
public |
SCTools is a suite of tools performing utility operations over single-cell samples
|
2024-12-13 |
|
popgen-entropy
|
public |
This program is for inferring population structure from autopolyploid and mixed-ploidy individuals, similar to structure, but using genotype-likelihood data for low- to medium-coverage sequencing depth.
|
2024-12-13 |
|
selectfasta
|
public |
FASTA or FASTQ select from a list of header names
|
2024-12-13 |
|
vcf-validator
|
public |
EBI EVA - Validation tool for VCF file format compliance
|
2024-12-13 |
|
perl-digest-crc
|
public |
Generic CRC functions
|
2024-12-13 |
|
ucsc-wigcorrelate
|
public |
Produce a table that correlates all pairs of wigs.
|
2024-12-13 |
|
genodsp
|
public |
General workbench for processing signals along genomic (chromosomal) intervals
|
2024-12-13 |
|
perl-perl-unsafe-signals
|
public |
Allow unsafe handling of signals in selected blocks
|
2024-12-13 |
|
ucsc-hgfindspec
|
public |
Create hgFindSpec table from trackDb.ra files.
|
2024-12-13 |
|
sfold
|
public |
Software for Statistical Folding of Nucleic Acids
|
2024-12-13 |
|
fqtrim
|
public |
fqtrim is a versatile stand-alone utility that can be used to trim adapters, poly-A tails, terminal unknown bases (Ns) and low quality 3' regions in reads from high-throughput next-generation sequencing machines.
|
2024-12-13 |
|
nucleosome_prediction
|
public |
This tool allows you to submit a genomic sequence and to recieve a prediction of the nucleosomes positions on it,
|
2024-12-13 |
|
ucsc-ratolines
|
public |
Output .ra file stanzas as single lines, with pipe-separated fields.
|
2024-12-13 |
|
fasta_ushuffle
|
public |
a wrapper for uShuffle
|
2024-12-13 |
|
art
|
public |
No Summary
|
2024-12-13 |
|
kalign2
|
public |
Kalign is a fast and accurate multiple sequence alignment algorithm designed to align large numbers of protein sequences.
|
2024-12-13 |
|
ampliconsuite
|
public |
An end-to-end wrapper for focal amplification analysis from whole-genome sequencing using AmpliconArchitect and associated tools.
|
2024-12-13 |
|
r-erah
|
public |
Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics.
|
2024-12-13 |
|
gvcfgenotyper
|
public |
A utility for merging and genotyping Illumina-style GVCFs.
|
2024-12-13 |
|
perl-acme-damn
|
public |
'Unbless' Perl objects.
|
2024-12-13 |
|
r-lme4qtl
|
public |
Linear mixed models (lme4) with flexible covariance structure for qtl and association analysis.
|
2024-12-13 |
|
pizzly
|
public |
Fast fusion detection using kallisto
|
2024-12-13 |
|
oligomap
|
public |
Oligomap is a program for fast identification of nearly-perfect matches of small RNAs in sequence databases.
|
2024-12-13 |
|
starcode
|
public |
Starcode: sequence clustering based on all-pairs search
|
2024-12-13 |
|
nanoblaster
|
public |
Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences
|
2024-12-13 |
|
genometester4
|
public |
A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
|
2024-12-13 |
|
ucsc-hgspeciesrna
|
public |
Create fasta file with RNA from one species
|
2024-12-13 |
|
dialign2
|
public |
DIALIGN multiple sequence alignment using various sources of external information
|
2024-12-13 |
|
ucsc-trfbig
|
public |
Mask tandem repeats on a big sequence file.
|
2024-12-13 |
|
ucsc-bedgraphtobigwig
|
public |
Convert a bedGraph file to bigWig format.
|
2024-12-13 |
|
fqzcomp
|
public |
Fqzcomp is a basic fastq compressor, designed primarily for high performance.
|
2024-12-13 |
|
ucsc-maffrag
|
public |
Extract maf sequences for a region from database
|
2024-12-13 |
|
meta-apo
|
public |
Meta-Apo improves accuracy of 16S-amplicon-based prediction of microbiome function
|
2024-12-13 |
|
tidehunter
|
public |
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
|
2024-12-13 |
