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ncbi-amrfinderplus
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public |
AMRFinderPlus finds antimicrobial resistance and other genes in protein or nucleotide sequences.
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2025-04-22 |
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mgnify-pipelines-toolkit
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public |
Collection of scripts and tools for MGnify pipelines.
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2025-04-22 |
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hymet
|
public |
HYMET (Hybrid Metagenomic Tool) for taxonomic identification of metagenomic sequences.
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2025-04-22 |
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hmftools-cider
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public |
Determine a comprehensive list of CDR3 sequences for each of the IG and TCR loci from RNA and DNA sequence data.
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2025-04-22 |
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hmftools-teal
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public |
Characterises telomeres in tumor and normal samples from WGS data.
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2025-04-22 |
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pytantan
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public |
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.
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2025-04-22 |
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esme_pnetcdf_mvapich_4_0
|
public |
PnetCDF - Parallel netCDF
|
2025-04-22 |
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esme_esmf_mvapich_4_0
|
public |
ESMF - Earth System Modeling Framework
|
2025-04-22 |
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esme_mvapich_4_0
|
public |
Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support.
|
2025-04-22 |
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esme_netcdf-fortran_mvapich_4_0
|
public |
NetCDF-Fortran - netCDF interface for Fortran
|
2025-04-22 |
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esme_netcdf-c_mvapich_4_0
|
public |
NetCDF-C - netCDF interface for C
|
2025-04-22 |
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esme_pio_mvapich_4_0
|
public |
ParallelIO - High-level parallel I/O library
|
2025-04-22 |
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esme_hdf5_mvapich_4_0
|
public |
HDF5 - Hierarchical Data Format 5
|
2025-04-22 |
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esme_omb_mvapich_4_0
|
public |
OSU Micro Benchmarks
|
2025-04-22 |
|
nail
|
public |
Profile Hidden Markov Model (pHMM) biological sequence alignment tool
|
2025-04-22 |
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libcarna
|
public |
Real-time 3D visualization of biomedical data and beyond
|
2025-04-22 |
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panaln
|
public |
Indexing pangenome for read alignment.
|
2025-04-22 |
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r-floral
|
public |
Log-ratio Lasso regression for continuous, binary, and survival outcomes with (longitudinal) compositional features. See Fei and others (2024) <doi:10.1016/j.crmeth.2024.100899>.
|
2025-04-22 |
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ervmancer
|
public |
Quantifies HERV short read RNA sequencing expression data
|
2025-04-22 |
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r-bpcells
|
public |
Efficient operations for single cell ATAC-seq fragments and RNA counts matrices. Interoperable with standard file formats, and introduces efficient bit-packed formats that allow large storage savings and increased read speeds.
|
2025-04-22 |
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kmer2stats
|
public |
A tool for creating data files for statistic based on kmers.
|
2025-04-22 |
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cdskit
|
public |
CDSKIT processes protein-coding sequences.
|
2025-04-22 |
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bakrep-cli
|
public |
BakRep-CLI: a commandline tool for the batch download of BakRep datasets
|
2025-04-22 |
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mpboot
|
public |
Fast phylogenetic maximum parsimony tree inference and bootstrap approximation.
|
2025-04-22 |
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bbmapy
|
public |
A Python wrapper for BBTools.
|
2025-04-22 |
