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bioconductor-mesh.dsi.eg.db
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public |
Mapping table for Drosophila simulans Gene ID to MeSH
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2023-06-16 |
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bioconductor-ggbase
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public |
GGBase infrastructure for genetics of gene expression package GGtools
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2023-06-16 |
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r-hardyweinberg
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public |
Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) <doi:10.1126/science.28.706.49> for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included (Graffelman & Weir, 2016) <doi: 10.1038/hdy.2016.20>, including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-allelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots.
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2023-06-16 |
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bioconductor-org.pf.plasmo.db
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public |
Genome wide annotation for Malaria
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2023-06-16 |
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bioconductor-mesh.rno.eg.db
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public |
Mapping table for Rattus norvegicus Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.pto.eg.db
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public |
Mapping table for Pan troglodytes Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.pfa.3d7.eg.db
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public |
Mapping table for Plasmodium falciparum 3D7 Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.mtr.eg.db
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public |
Mapping table for Medicago truncatula Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.gma.eg.db
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public |
Mapping table for Glycine max Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.eqc.eg.db
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public |
Mapping table for Equus caballus Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.dme.eg.db
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public |
Mapping table for Drosophila melanogaster Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.cja.eg.db
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public |
Mapping table for Callithrix jacchus Gene ID to MeSH
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2023-06-16 |
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bioconductor-ceu1kgv
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public |
expression + genotype on 79 unrelated CEU individuals
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2023-06-16 |
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r-loose.rock
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public |
Collection of functions to improve work-flow in survival analysis and data science. The package features include: the generation of balanced datasets, live retrieval of protein coding genes from two public databases, generation of random matrix based on covariance matrix, cache function to store function results. This work was supported by two grants from the Portuguese Foundation for Science and technology, and the EU Commission under SOUND project.
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2023-06-16 |
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bioconductor-mesh.sco.a32.eg.db
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public |
Mapping table for Streptomyces coelicolor A3(2) Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.ocu.eg.db
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public |
Mapping table for Oryctolagus cuniculus Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.laf.eg.db
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public |
Mapping table for Loxodonta africana Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.der.eg.db
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public |
Mapping table for Drosophila eracta Gene ID to MeSH
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2023-06-16 |
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bioconductor-mtseekerdata
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public |
Supporting Data for the MTseeker Package
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2023-06-16 |
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bioconductor-svm2crm
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public |
Detection of cis-regulatory elements using svm implemented in LiblineaR.
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2023-06-16 |
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bioconductor-mesh.pae.pao1.eg.db
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public |
Mapping table for Pseudomonas aeruginosa PAO1 Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.nle.eg.db
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public |
Mapping table for Nomascus leucogenys Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.eco.ed1a.eg.db
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public |
Mapping table for Escherichia coli ED1a Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.dpe.eg.db
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public |
Mapping table for Drosophila persimilis Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.dan.eg.db
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public |
Mapping table for Drosophila ananassae Gene ID to MeSH
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2023-06-16 |
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bioconductor-methyvimdata
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public |
Example experimental data for use with the methyvim package
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2023-06-16 |
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bioconductor-yrimulti
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public |
support for expression, methylation, DHS, VCF for YRI
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2023-06-16 |
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bioconductor-mtseeker
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public |
Bioconductor Tools for Human Mitochondrial Variant Analysis
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2023-06-16 |
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bioconductor-funcisnp
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public |
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
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2023-06-16 |
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bioconductor-mirsponge
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public |
The name of the miRsponge package has been changed into "miRspongeR". Future updates will be seen in the miRspongeR package (http://bioconductor.org/packages/miRspongeR/). This package provides several functions to study miRNA sponge (also called ceRNA or miRNA decoy), including popular methods for identifying miRNA sponge interactions, and the integrative method to integrate miRNA sponge interactions from different methods, as well as the functions to validate miRNA sponge interactions, and infer miRNA sponge modules, conduct enrichment analysis of modules, and conduct survival analysis of modules.
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2023-06-16 |
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bioconductor-mesh.gga.eg.db
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public |
Mapping table for Gallus gallus Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.dgr.eg.db
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public |
Mapping table for Drosophila grimshawi Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.cpo.eg.db
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public |
Mapping table for Cavia porcellus Gene ID to MeSH
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2023-06-16 |
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bioconductor-keggprofile
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public |
An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway
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2023-06-16 |
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r-rphast
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public |
Provides an R interface to the 'PHAST'(<http://compgen.cshl.edu/phast/>) software (Phylogenetic Analysis with Space/Time Models). It can be used for many types of analysis in comparative and evolutionary genomics, such as estimating models of evolution from sequence data, scoring alignments for conservation or acceleration, and predicting elements based on conservation or custom phylogenetic hidden Markov models. It can also perform many basic operations on multiple sequence alignments and phylogenetic trees.
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2023-06-16 |
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bioconductor-mesh.oni.eg.db
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public |
Mapping table for Oreochromis niloticus Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.mmu.eg.db
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public |
Mapping table for Mus musculus Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.miy.eg.db
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public |
Mapping table for Lotus japonicus Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.eco.iai39.eg.db
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public |
Mapping table for Escherichia coli IAI39 Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.dre.eg.db
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public |
Mapping table for Danio rerio Gene ID to MeSH
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2023-06-16 |
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bioconductor-cobindr
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public |
Finding Co-occuring motifs of transcription factor binding sites
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2023-06-16 |
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bioconductor-mesh.zma.eg.db
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public |
Mapping table for Zea mays Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.oan.eg.db
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public |
Mapping table for Ornithorhynchus anatinus Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.mdo.eg.db
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public |
Mapping table for Monodelphis domestica Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.eco.o157.h7.sakai.eg.db
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public |
Mapping table for Escherichia coli O157:H7 Sakai Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.eco.k12.mg1655.eg.db
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public |
Mapping table for Escherichia coli str K-12 substr. MG1655 Gene ID to MeSH
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2023-06-16 |
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bioconductor-ggtools
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public |
software and data for analyses in genetics of gene expression
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2023-06-16 |
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r-rsnps
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public |
A programmatic interface to various 'SNP' 'datasets' on the web: 'OpenSNP' (<https://opensnp.org>), and 'NBCIs' 'dbSNP' database (<https://www.ncbi.nlm.nih.gov/projects/SNP>). Functions are included for searching for 'NCBI'. For 'OpenSNP', functions are included for getting 'SNPs', and data for 'genotypes', 'phenotypes', annotations, and bulk downloads of data by user.
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2023-06-16 |
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bioconductor-mesh.pab.eg.db
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public |
Mapping table for Pongo abelii Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.mga.eg.db
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public |
Mapping table for Meleagris gallopavo Gene ID to MeSH
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2023-06-16 |
