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bioconductor-flowqbdata
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public |
The flowQBData package provides data files used as examples and for testing of the software provided in the flowQB package.
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2023-06-16 |
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bioconductor-caomicsv
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public |
Visualization of multi-dimentional cancer genomics data
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2023-06-16 |
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bioconductor-affypara
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public |
Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays
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2023-06-16 |
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bioconductor-charmdata
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public |
An example dataset for use with the charm package
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2023-06-16 |
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bioconductor-charm
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public |
This package implements analysis tools for DNA methylation data generated using Nimblegen microarrays and the McrBC protocol. It finds differentially methylated regions between samples, calculates percentage methylation estimates and includes array quality assessment tools.
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2023-06-16 |
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bioconductor-affyqcreport
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public |
QC Report Generation for affyBatch objects
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2023-06-16 |
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bioconductor-rnaseqr
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public |
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
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2023-06-16 |
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bioconductor-champ
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public |
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
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2023-06-16 |
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bioconductor-pbase
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public |
Manipulating and exploring protein and proteomics data
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2023-06-16 |
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bioconductor-yaqcaffy
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public |
Affymetrix expression data quality control and reproducibility analysis
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2023-06-16 |
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bioconductor-plasfia
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public |
FIA-HRMS plasma dataset
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2023-06-16 |
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bioconductor-proteomicsannotationhubdata
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public |
Transform public proteomics data resources into Bioconductor Data Structures
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2023-06-16 |
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bioconductor-mmpalatemirna
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public |
Murine Palate miRNA Expression Analysis
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2023-06-16 |
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bioconductor-metaseqr
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public |
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
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2023-06-16 |
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bioconductor-rhvdm
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public |
A R implementation of HVDM (Genome Biol 2006, V7(3) R25)
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2023-06-16 |
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r-plsgenomics
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public |
Routines for PLS-based genomic analyses, implementing PLS methods for classification with microarray data and prediction of transcription factor activities from combined ChIP-chip analysis. The >=1.2-1 versions include two new classification methods for microarray data: GSIM and Ridge PLS. The >=1.3 versions includes a new classification method combining variable selection and compression in logistic regression context: logit-SPLS; and an adaptive version of the sparse PLS.
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2023-06-16 |
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bioconductor-powerexplorer
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public |
Power Estimation Tool for RNA-Seq and proteomics data
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2023-06-16 |
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r-mess
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public |
A mixed collection of useful and semi-useful diverse statistical functions, some of which may even be referenced in The R Primer book.
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2023-06-16 |
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bioconductor-mulder2012
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public |
Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens
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2023-06-16 |
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bioconductor-htsanalyzer
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public |
Gene set over-representation, enrichment and network analyses for high-throughput screens
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2023-06-16 |
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bioconductor-maqcsubsetafx
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public |
MAQC data subset for the Affymetrix platform
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2023-06-16 |
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r-rismed
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public |
A set of tools to extract bibliographic content from the National Center for Biotechnology Information (NCBI) databases, including PubMed. The name RISmed is a portmanteau of RIS (for Research Information Systems, a common tag format for bibliographic data) and PubMed.
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2023-06-16 |
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bioconductor-dualks
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public |
Dual KS Discriminant Analysis and Classification
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2023-06-16 |
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bioconductor-allenpvc
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public |
GEO accession data GSE71585 as a SingleCellExperiment
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2023-06-16 |
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bioconductor-scisi
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public |
In Silico Interactome
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2023-06-16 |
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bioconductor-gcmap
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public |
Tools for Connectivity Map-like analyses
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2023-06-16 |
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bioconductor-imetagene
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public |
A graphical interface for the metagene package
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2023-06-16 |
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bioconductor-arraytv
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public |
Implementation of wave correction for arrays
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2023-06-16 |
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bioconductor-missmethyl
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public |
Analysing Illumina HumanMethylation BeadChip Data
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2023-06-16 |
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bioconductor-timeseriesexperiment
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public |
Analysis for short time-series data
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2023-06-16 |
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bioconductor-cve
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public |
Cancer Variant Explorer
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2023-06-16 |
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bioconductor-anamir
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public |
An integrated analysis package of miRNA and mRNA expression data
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2023-06-16 |
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bioconductor-slgi
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public |
Synthetic Lethal Genetic Interaction
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2023-06-16 |
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bioconductor-expressionview
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public |
Visualize biclusters identified in gene expression data
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2023-06-16 |
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bioconductor-migsa
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public |
Massive and Integrative Gene Set Analysis
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2023-06-16 |
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bioconductor-pathwaysplice
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public |
An R Package for Unbiased Splicing Pathway Analysis
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2023-06-16 |
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bioconductor-gcmapweb
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public |
A web interface for gene-set enrichment analyses
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2023-06-16 |
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bioconductor-impulsede2
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public |
Differential expression analysis of longitudinal count data sets
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2023-06-16 |
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r-imp4p
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public |
Functions to analyse missing value mechanisms and to impute data sets in the context of bottom-up MS-based proteomics.
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2023-06-16 |
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bioconductor-methylgsa
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public |
Gene Set Analysis Using the Outcome of Differential Methylation
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2023-06-16 |
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bioconductor-pcpheno
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public |
Phenotypes and cellular organizational units
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2023-06-16 |
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bioconductor-ppistats
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public |
Protein-Protein Interaction Statistical Package
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2023-06-16 |
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bioconductor-eisa
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public |
Expression data analysis via the Iterative Signature Algorithm
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2023-06-16 |
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bioconductor-tcgabiolinksgui
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public |
"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data"
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2023-06-16 |
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bioconductor-meal
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public |
Perform methylation analysis
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2023-06-16 |
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bioconductor-genogam
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public |
A GAM based framework for analysis of ChIP-Seq data
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2023-06-16 |
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bioconductor-dbchip
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public |
Differential Binding of Transcription Factor with ChIP-seq
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2023-06-16 |
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bioconductor-celltree
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public |
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
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2023-06-16 |
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bioconductor-mesh.syn.eg.db
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public |
Mapping table for Cyanobacteria Gene ID to MeSH
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2023-06-16 |
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bioconductor-mesh.osa.eg.db
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public |
Mapping table for Oryza sativa Japonica Gene ID to MeSH
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2023-06-16 |
