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bioconductor-bsgenome.btaurus.ucsc.bostau8
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public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau8, Jun. 2014) and stored in Biostrings objects.
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2023-12-13 |
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bioconductor-bsgenome.btaurus.ucsc.bostau6
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public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau6, Nov. 2009) and stored in Biostrings objects.
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2023-12-13 |
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bioconductor-bsgenome.btaurus.ucsc.bostau4
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public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau4, Oct. 2007) and stored in Biostrings objects.
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2023-12-13 |
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bioconductor-bsgenome.btaurus.ucsc.bostau3
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public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects.
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2023-12-13 |
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bioconductor-bsgenome.athaliana.tair.tair9
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public |
Full genome sequences for Arabidopsis thaliana as provided by TAIR (TAIR9 Genome Release) and stored in Biostrings objects. Note that TAIR10 is an "annotation release" based on the same genome assembly as TAIR9.
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2023-12-13 |
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bioconductor-bsgenome.athaliana.tair.04232008
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public |
Full genome sequences for Arabidopsis thaliana as provided by TAIR (snapshot from April 23, 2008) and stored in Biostrings objects.
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2023-12-13 |
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bioconductor-bsgenome.aofficinalis.ncbi.v1
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public |
Full genome sequences for Asparagus officinalis (Garden asparagus) as provided by NCBI (Aspof.V1, Feb. 2017) and stored in Biostrings objects.
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2023-12-13 |
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bioconductor-bsgenome.amellifera.ucsc.apimel2
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public |
Full genome sequences for Apis mellifera (Honey Bee) as provided by UCSC (apiMel2, Jan. 2005) and stored in Biostrings objects.
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2023-12-13 |
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bioconductor-bsgenome.amellifera.beebase.assembly4
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public |
iFull genome sequences for Apis mellifera (Honey Bee) as provided by BeeBase (assembly4, Feb. 2008) and stored in Biostrings objects.
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2023-12-13 |
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bioconductor-bsgenome.alyrata.jgi.v1
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public |
Arabidopsis lyrata full genome (JGI version V1.0)
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2023-12-13 |
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bioconductor-bsgenome.hsapiens.ucsc.hg38.masked
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public |
Full masked genomic sequences for Homo sapiens (UCSC version hg38)
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2023-12-13 |
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bioconductor-bsgenome.hsapiens.ucsc.hg38
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public |
Full genomic sequences for Homo sapiens (UCSC genome hg38)
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2023-12-13 |
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bioconductor-tscan
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public |
Tools for Single-Cell Analysis
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2023-12-13 |
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bioconductor-multihiccompare
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public |
Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available
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2023-12-13 |
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bioconductor-hiccompare
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public |
HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
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2023-12-13 |
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bioconductor-motifstack
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public |
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
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2023-12-13 |
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bioconductor-gostats
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public |
Tools for manipulating GO and microarrays
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2023-12-13 |
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bioconductor-category
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public |
Category Analysis
|
2023-12-13 |
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bioconductor-hgu133a.db
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public |
Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)
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2023-12-13 |
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bioconductor-systempiper
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public |
systemPipeR: workflow management and report generation environment
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2023-12-13 |
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bioconductor-greylistchip
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public |
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
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2023-12-13 |
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bioconductor-consensusseeker
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public |
Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
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2023-12-13 |
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bioconductor-dropletutils
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public |
Utilities for Handling Single-Cell Droplet Data
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2023-12-13 |
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bioconductor-zinbwave
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public |
Zero-Inflated Negative Binomial Model for RNA-Seq Data
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2023-12-13 |
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bioconductor-bsgenome.celegans.ucsc.ce2
|
public |
Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce2, Mar. 2004) and stored in Biostrings objects.
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2023-12-13 |
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bioconductor-bsgenome.hsapiens.1000genomes.hs37d5
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public |
1000genomes Phase2 Reference Genome Sequence (hs37d5), based on NCBI GRCh37.
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2023-12-13 |
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bioconductor-hgu133a2.db
|
public |
Affymetrix Affymetrix HG-U133A_2 Array annotation data (chip hgu133a2)
|
2023-12-13 |
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bioconductor-hgug4100a.db
|
public |
Agilent Human 1 cDNA Microarray Kit annotation data (chip hgug4100a) assembled using data from public repositories
|
2023-12-13 |
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bioconductor-gghumanmethcancerpanelv1.db
|
public |
Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1) assembled using data from public repositories
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2023-12-13 |
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bioconductor-h10kcod.db
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public |
Codelink UniSet Human I Bioarray (~10 000 human genes) annotation data (chip h10kcod) assembled using data from public repositories
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2023-12-13 |
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bioconductor-hugene21sttranscriptcluster.db
|
public |
Affymetrix hugene21 annotation data (chip hugene21sttranscriptcluster)
|
2023-12-13 |
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bioconductor-illuminahumanv3.db
|
public |
Illumina HumanHT12v3 annotation data (chip illuminaHumanv3) assembled using data from public repositories
|
2023-12-13 |
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bioconductor-pathview
|
public |
a tool set for pathway based data integration and visualization
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2023-12-13 |
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bioconductor-hgu95e.db
|
public |
Affymetrix Affymetrix HG U95E Array annotation data (chip hgu95e)
|
2023-12-13 |
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bioconductor-hta20probeset.db
|
public |
Affymetrix hta20 annotation data (chip hta20probeset)
|
2023-12-13 |
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bioconductor-bigmelon
|
public |
Illumina methylation array analysis for large experiments
|
2023-12-13 |
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bioconductor-hi16cod.db
|
public |
Codelink Human Inflammation 16 Bioarray annotation data (chip hi16cod) assembled using data from public repositories
|
2023-12-13 |
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bioconductor-nugohs1a520180.db
|
public |
Affymetrix nugohs1a520180 annotation data (chip nugohs1a520180) assembled using data from public repositories
|
2023-12-13 |
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bioconductor-skewr
|
public |
Visualize Intensities Produced by Illumina's Human Methylation 450k BeadChip
|
2023-12-13 |
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bioconductor-hgubeta7.db
|
public |
Unknown annotation data (chip hgubeta7) assembled using data from public repositories
|
2023-12-13 |
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bioconductor-cocitestats
|
public |
Different test statistics based on co-citation.
|
2023-12-13 |
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bioconductor-hgu95b.db
|
public |
Affymetrix Affymetrix HG U95B Array annotation data (chip hgu95b)
|
2023-12-13 |
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bioconductor-hgug4101a.db
|
public |
Agilent Human 2 cDNA Microarry Kit annotation data (chip hgug4101a) assembled using data from public repositories
|
2023-12-13 |
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bioconductor-ffpeexampledata
|
public |
Illumina DASL example microarray data
|
2023-12-13 |
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bioconductor-hgu95d.db
|
public |
Affymetrix Affymetrix HG U95D Array annotation data (chip hgu95d)
|
2023-12-13 |
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bioconductor-hta20transcriptcluster.db
|
public |
Affymetrix hta20 annotation data (chip hta20transcriptcluster)
|
2023-12-13 |
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bioconductor-lumiratidmapping
|
public |
This package includes mappings information between different types of Illumina IDs of Illumina Rat chips and nuIDs. It also includes mappings of all nuIDs included in Illumina Rat chips to RefSeq IDs with mapping qualities information.
|
2023-12-13 |
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bioconductor-huo22.db
|
public |
FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22) assembled using data from public repositories
|
2023-12-13 |
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bioconductor-hugene10sttranscriptcluster.db
|
public |
Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster)
|
2023-12-13 |
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bioconductor-maqcsubsetilm
|
public |
MAQC data subset for the Illumina platform
|
2023-12-13 |
