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bioconductor-rnaseqpower
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public |
Sample size for RNAseq studies
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2025-04-22 |
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bioconductor-rots
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public |
Reproducibility-Optimized Test Statistic
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2025-04-22 |
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bioconductor-piano
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public |
Platform for integrative analysis of omics data
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2025-04-22 |
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bioconductor-ballgown
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public |
Flexible, isoform-level differential expression analysis
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2025-04-22 |
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bioconductor-bayespeak
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public |
Bayesian Analysis of ChIP-seq Data
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2025-04-22 |
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bioconductor-tximport
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public |
Import and summarize transcript-level estimates for transcript- and gene-level analysis
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2025-04-22 |
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bioconductor-biomformat
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public |
An interface package for the BIOM file format
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2025-04-22 |
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bioconductor-cummerbund
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public |
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
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2025-04-22 |
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r-coloc
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public |
Performs the colocalisation tests described in Plagnol et al (2009) <doi:10.1093/biostatistics/kxn039>, Wallace et al (2013) <doi:10.1002/gepi.21765> and Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>.
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2025-04-22 |
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r-qqman
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public |
Create Q-Q and manhattan plots for GWAS data from PLINK results.
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2025-04-22 |
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bioconductor-pcamethods
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public |
A collection of PCA methods
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2025-04-22 |
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r-scrm
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public |
A coalescent simulator that allows the rapid simulation of biological sequences under neutral models of evolution. Different to other coalescent based simulations, it has an optional approximation parameter that allows for high accuracy while maintaining a linear run time cost for long sequences. It is optimized for simulating massive data sets as produced by Next- Generation Sequencing technologies for up to several thousand sequences.
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2025-04-22 |
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bioconductor-metams
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public |
MS-based metabolomics annotation pipeline
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2025-04-22 |
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bioconductor-flowdensity
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public |
Sequential Flow Cytometry Data Gating
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2025-04-22 |
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bioconductor-flowai
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public |
Automatic and interactive quality control for flow cytometry data
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2025-04-22 |
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bioconductor-flowcore
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public |
flowCore: Basic structures for flow cytometry data
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2025-04-22 |
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bioconductor-flowcl
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public |
Semantic labelling of flow cytometric cell populations
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2025-04-22 |
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bioconductor-biosigner
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public |
Signature discovery from omics data
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2025-04-22 |
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nglview
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public |
An IPython widget to interactively view molecular structures and trajectories. Utilizes the embeddable NGL Viewer for rendering.
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2025-04-22 |
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bioconductor-motifrg
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public |
A package for discriminative motif discovery, designed for high throughput sequencing dataset
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2025-04-22 |
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bioconductor-seqlogo
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public |
Sequence logos for DNA sequence alignments
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2025-04-22 |
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bioconductor-bsgenome.dmelanogaster.ucsc.dm3
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public |
Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, Apr. 2006) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.celegans.ucsc.ce6
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public |
Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-org.ce.eg.db
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public |
Genome wide annotation for Worm
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2025-04-22 |
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bioconductor-ebseq
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public |
An R package for gene and isoform differential expression analysis of RNA-seq data
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2025-04-22 |
