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bioconductor-biseq
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public |
Processing and analyzing bisulfite sequencing data
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2024-12-27 |
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bioconductor-fastliquidassociation
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public |
functions for genome-wide application of Liquid Association
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2024-12-27 |
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bioconductor-padog
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public |
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
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2024-12-27 |
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bioconductor-mapredictdsc
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public |
Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge
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2024-12-27 |
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bioconductor-humanstemcell
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public |
Human Stem Cells time course experiment
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2024-12-27 |
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bioconductor-keggorthology
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public |
graph support for KO, KEGG Orthology
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2024-12-27 |
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bioconductor-neve2006
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public |
expression and CGH data on breast cancer cell lines
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2024-12-27 |
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bioconductor-kegglincs
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public |
Visualize all edges within a KEGG pathway and overlay LINCS data
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2024-12-27 |
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bioconductor-dose
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public |
Disease Ontology Semantic and Enrichment analysis
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2024-12-27 |
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bioconductor-translatome
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public |
Comparison between multiple levels of gene expression
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2024-12-27 |
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bioconductor-tin
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public |
Transcriptome instability analysis
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2024-12-27 |
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bioconductor-diffcoexp
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public |
Differential Co-expression Analysis
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2024-12-27 |
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bioconductor-mcbiclust
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public |
Massive correlating biclusters for gene expression data and associated methods
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2024-12-27 |
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bioconductor-flagme
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public |
Analysis of Metabolomics GC/MS Data
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2024-12-27 |
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bioconductor-webbioc
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public |
Bioconductor Web Interface
|
2024-12-27 |
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bioconductor-mait
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public |
Statistical Analysis of Metabolomic Data
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2024-12-27 |
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bioconductor-cellity
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public |
Quality Control for Single-Cell RNA-seq Data
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2024-12-27 |
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bioconductor-camera
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public |
Collection of annotation related methods for mass spectrometry data
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2024-12-27 |
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bioconductor-omadb
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public |
R wrapper for the OMA REST API
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2024-12-27 |
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bioconductor-rtnsurvival
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public |
Survival analysis using transcriptional networks inferred by the RTN package
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2024-12-27 |
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bioconductor-coseq
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public |
Co-Expression Analysis of Sequencing Data
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2024-12-27 |
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bioconductor-isomirs
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public |
Analyze isomiRs and miRNAs from small RNA-seq
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2024-12-27 |
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bioconductor-oppar
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public |
Outlier profile and pathway analysis in R
|
2024-12-27 |
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bioconductor-tscan
|
public |
Tools for Single-Cell Analysis
|
2024-12-27 |
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bioconductor-gsva
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public |
Gene Set Variation Analysis for Microarray and RNA-Seq Data
|
2024-12-27 |
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bioconductor-gsean
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public |
Gene Set Enrichment Analysis with Networks
|
2024-12-27 |
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bioconductor-celaref
|
public |
Single-cell RNAseq cell cluster labelling by reference
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2024-12-27 |
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bioconductor-opossom
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public |
Comprehensive analysis of transcriptome data
|
2024-12-27 |
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bioconductor-cnordt
|
public |
Add-on to CellNOptR: Discretized time treatments
|
2024-12-27 |
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bioconductor-cnorfuzzy
|
public |
Addon to CellNOptR: Fuzzy Logic
|
2024-12-27 |
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bioconductor-cnorode
|
public |
ODE add-on to CellNOptR
|
2024-12-27 |
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bioconductor-multihiccompare
|
public |
Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available
|
2024-12-27 |
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bioconductor-netresponse
|
public |
Functional Network Analysis
|
2024-12-27 |
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bioconductor-cellnoptr
|
public |
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
|
2024-12-27 |
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bioconductor-oncosimulr
|
public |
Forward Genetic Simulation of Cancer Progression with Epistasis
|
2024-12-27 |
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bioconductor-segmentseq
|
public |
Methods for identifying small RNA loci from high-throughput sequencing data
|
2024-12-27 |
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bioconductor-streamer
|
public |
Enabling stream processing of large files
|
2024-12-27 |
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bioconductor-chipsim
|
public |
Simulation of ChIP-seq experiments
|
2024-12-27 |
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bioconductor-rbioinf
|
public |
RBioinf
|
2024-12-27 |
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bioconductor-rtreemix
|
public |
Rtreemix: Mutagenetic trees mixture models.
|
2024-12-27 |
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bioconductor-nucler
|
public |
Nucleosome positioning package for R
|
2024-12-27 |
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bioconductor-rgraphviz
|
public |
Provides plotting capabilities for R graph objects
|
2024-12-27 |
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bioconductor-basecallqc
|
public |
Working with Illumina Basecalling and Demultiplexing input and output files
|
2024-12-27 |
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bioconductor-otubase
|
public |
Provides structure and functions for the analysis of OTU data
|
2024-12-27 |
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bioconductor-rbgl
|
public |
An interface to the BOOST graph library
|
2024-12-27 |
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bioconductor-genefilter
|
public |
genefilter: methods for filtering genes from high-throughput experiments
|
2024-12-27 |
|
r-wgcna
|
public |
Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.
|
2024-12-27 |
|
bioconductor-graph
|
public |
graph: A package to handle graph data structures
|
2024-12-27 |
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bioconductor-gosemsim
|
public |
GO-terms Semantic Similarity Measures
|
2024-12-27 |
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bioconductor-interactionset
|
public |
Base Classes for Storing Genomic Interaction Data
|
2024-12-27 |
