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bioconductor-mimager
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public |
mimager: The Microarray Imager
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2025-03-25 |
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bioconductor-desousa2013
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public |
Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion
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2025-03-25 |
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bioconductor-msstatsqcgui
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public |
A graphical user interface for MSstatsQC package
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2025-03-25 |
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bioconductor-crossmeta
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public |
Cross Platform Meta-Analysis of Microarray Data
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2025-03-25 |
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bioconductor-powerexplorer
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public |
Power Estimation Tool for RNA-Seq and proteomics data
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2025-03-25 |
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bioconductor-charm
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public |
This package implements analysis tools for DNA methylation data generated using Nimblegen microarrays and the McrBC protocol. It finds differentially methylated regions between samples, calculates percentage methylation estimates and includes array quality assessment tools.
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2025-03-25 |
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bioconductor-topdownrdata
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public |
Example Files for the topdownr R Package
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2025-03-25 |
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bioconductor-topdownr
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public |
Investigation of Fragmentation Conditions in Top-Down Proteomics
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2025-03-25 |
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bioconductor-synapterdata
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public |
Data accompanying the synapter package
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2025-03-25 |
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bioconductor-qplexdata
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public |
Data accompanying qPLEXanalyzer package
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2025-03-25 |
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bioconductor-qplexanalyzer
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public |
Tools for quantitative proteomics data analysis
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2025-03-25 |
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bioconductor-msstatsqc
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public |
Longitudinal system suitability monitoring and quality control for proteomic experiments
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2025-03-25 |
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bioconductor-eventpointer
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public |
An effective identification of alternative splicing events using junction arrays and RNA-Seq data
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2025-03-25 |
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r-isogene
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public |
Offers framework for testing for monotonic relationship between gene expression and doses in a microarray experiment. Several testing procedures including the global likelihood-ratio test (Bartholomew, 1961), Williams (1971, 1972), Marcus (1976), M (Hu et al. 2005) and the modified M (Lin et al. 2007) are used to test for the monotonic trend in gene expression with respect to doses. BH (Benjamini and Hochberg 1995) and BY (Benjamini and Yekutieli 2004) FDR controlling procedures are applied to adjust the raw p-values obtained from the permutations.
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2025-03-25 |
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bioconductor-xhybcasneuf
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public |
EBI/PSB cross-hybridisation study package
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2025-03-25 |
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bioconductor-davidtiling
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public |
Data and analysis scripts for David, Huber et al. yeast tiling array paper
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2025-03-25 |
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bioconductor-cctutorial
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public |
Data package for ChIP-chip tutorial
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2025-03-25 |
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r-cp4p
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public |
Functions to check whether a vector of p-values respects the assumptions of FDR (false discovery rate) control procedures and to compute adjusted p-values.
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2025-03-25 |
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bioconductor-prolocdata
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public |
Data accompanying the pRoloc package
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2025-03-25 |
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bioconductor-dep
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public |
Differential Enrichment analysis of Proteomics data
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2025-03-25 |
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bioconductor-mmpalatemirna
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public |
Murine Palate miRNA Expression Analysis
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2025-03-25 |
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bioconductor-metaseqr
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public |
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
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2025-03-25 |
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bioconductor-doscheda
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public |
A DownStream Chemo-Proteomics Analysis Pipeline
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2025-03-25 |
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bioconductor-rnainteractmapk
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public |
Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi
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2025-03-25 |
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bioconductor-champ
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public |
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
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2025-03-25 |
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bioconductor-metacyto
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public |
MetaCyto: A package for meta-analysis of cytometry data
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2025-03-25 |
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r-mess
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public |
A mixed collection of useful and semi-useful diverse statistical functions, some of which may even be referenced in The R Primer book.
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2025-03-25 |
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bioconductor-mait
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public |
Statistical Analysis of Metabolomic Data
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2025-03-25 |
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bioconductor-amplican
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public |
Automated analysis of CRISPR experiments
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2025-03-25 |
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r-plsgenomics
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public |
Routines for PLS-based genomic analyses, implementing PLS methods for classification with microarray data and prediction of transcription factor activities from combined ChIP-chip analysis. The >=1.2-1 versions include two new classification methods for microarray data: GSIM and Ridge PLS. The >=1.3 versions includes a new classification method combining variable selection and compression in logistic regression context: logit-SPLS; and an adaptive version of the sparse PLS.
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2025-03-25 |
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bioconductor-affyqcreport
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public |
QC Report Generation for affyBatch objects
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2025-03-25 |
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bioconductor-phenotest
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public |
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.
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2025-03-25 |
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bioconductor-mulder2012
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public |
Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens
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2025-03-25 |
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bioconductor-htsanalyzer
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public |
Gene set over-representation, enrichment and network analyses for high-throughput screens
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2025-03-25 |
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bioconductor-gesper
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public |
Gene-Specific Phenotype EstimatoR
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2025-03-25 |
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bioconductor-egad
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public |
Extending guilt by association by degree
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2025-03-25 |
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bioconductor-affypara
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public |
Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays
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2025-03-25 |
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bioconductor-spikeinsubset
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public |
Part of Affymetrix's Spike-In Experiment Data
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2025-03-25 |
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bioconductor-spikein
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public |
Affymetrix Spike-In Experiment Data
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2025-03-25 |
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bioconductor-arraymvout
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public |
multivariate outlier detection for expression array QA
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2025-03-25 |
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bioconductor-rhvdm
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public |
A R implementation of HVDM (Genome Biol 2006, V7(3) R25)
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2025-03-25 |
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bioconductor-predasampledata
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public |
expression and copy number data on clear cell renal carcinoma samples
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2025-03-25 |
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bioconductor-rnaseqr
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public |
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
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2025-03-25 |
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bioconductor-mvoutdata
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public |
affy and illumina raw data for assessing outlier detector performance
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2025-03-25 |
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bioconductor-maqcsubsetafx
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public |
MAQC data subset for the Affymetrix platform
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2025-03-25 |
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bioconductor-maqcsubset
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public |
Experimental Data Package: MAQCsubset
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2025-03-25 |
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bioconductor-skewr
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public |
Visualize Intensities Produced by Illumina's Human Methylation 450k BeadChip
|
2025-03-25 |
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bioconductor-enmix
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public |
Quality control and analysis tools for Illumina DNA methylation BeadChip
|
2025-03-25 |
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r-tcr
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public |
Platform for the advanced analysis of T cell receptor and Immunoglobulin repertoires data and visualisation of the analysis results.
|
2025-03-25 |
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bioconductor-ccpromise
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public |
PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data
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2025-03-25 |
