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bioconda / packages

Package Name Access Summary Updated
perl-math-bigint public Arbitrary size floating point math package 2025-03-28
planemo public Command-line utilities to assist in building tools for the Galaxy project (http://galaxyproject.org/). 2025-03-28
arvados-python-client public Python API for Arvados 2025-03-27
perl-graph public a Perl extension for keeping data partially sorted 2025-03-27
bioconda-utils public Utilities for building and managing bioconda recipes. 2025-03-27
snakemake public A popular workflow management system aiming at full in-silico reproducibility. 2025-03-27
snakemake-minimal public A popular workflow management system aiming at full in-silico reproducibility. 2025-03-27
sistr_cmd public Salmonella In Silico Typing Resource (SISTR) commandline tool for serovar prediction 2025-03-26
snippy public Rapid bacterial SNP calling and core genome alignments 2025-03-26
mofapy public Multi-Omics Factor Analysis 2025-03-25
graphaligner public Sequence to graph aligner for long reads 2025-03-25
kwip public kWIP implements a de novo, alignment free measure of sample genetic dissimilarity 2025-03-25
r-stitch public STITCH - Sequencing To Imputation Through Constructing Haplotypes. 2025-03-25
r-cellassign public Automated, probabilistic assignment of cell types in scRNA-seq data 2025-03-25
r-pophelper public A set of useful functions for processing admixture proportion files from the population structure analysis softwares STRUCTURE, TESS, ADMIXTURE, BAPS, fastSTRUCTURE etc. The package contains functions to read runs, tabulate runs, summarise runs, plot runs, estimate K using Evanno method, export clumpp files, export distruct files and generate barplots. 2025-03-25
unifrac public Fast phylogenetic diversity calculations 2025-03-25
readfq public A high-speed tool to calculate reads number and total base count in FASTQ file, forked from Li Heng's original version 2025-03-25
consel public CONSEL calculates the probability value (i.e., p-value) to assess the confidence in the selection problem. Although CONSEL is applicable to any selection problem, it is mainly designed for the phylogenetic tree selection 2025-03-25
picrust2 public PICRUSt: Phylogenetic Investigation of Communities by Reconstruction of Unobserved States 2025-03-25
islandpath public IslandPath-DIMOB is a standalone software to predict genomic islands in bacterial and archaeal genomes based on the presence of dinucleotide biases and mobility genes. Genomic islands (GIs) are clusters of genes in prokaryotic genomes of probable horizontal origin. GIs are disproportionately associated with microbial adaptations of medical or environmental interest. 2025-03-25
perl-moosex-singleton public Turn your Moose class into a singleton 2025-03-25
gappa public Genesis Applications for Phylogenetic Placement Analysis 2025-03-25
ir public Program for Calculating the Repetitiveness of DNA Sequences 2025-03-25
digestiflow-demux public Digestiflow Command Line Client. 2025-03-25
digestiflow-cli public Command line client for Digestiflow. 2025-03-25

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