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ebfilter
|
public |
EBFilter (Empirical Bayesian Mutation Filtering)
|
2025-04-22 |
|
hichipper
|
public |
Processing HiChIP data into loops.
|
2025-04-22 |
|
orthomcl
|
public |
Ortholog groups of protein sequences
|
2025-04-22 |
|
bioconductor-dnashaper
|
public |
High-throughput prediction of DNA shape features
|
2025-04-22 |
|
combined-pvalues
|
public |
A library to combine, analyze, group and correct p-values in BED files.
Unique tools involve correction for spatial autocorrelation.
This is useful for ChIP-Seq probes and Tiling arrays, or any data with spatial correlation.
|
2025-04-22 |
|
snvphyl-tools
|
public |
The SNVPhyl (Single Nucleotide Variant PHYLogenomics) pipeline is a pipeline for identifying
Single Nucleotide Variants (SNV) within a collection of microbial genomes and constructing a phylogenetic tree
|
2025-04-22 |
|
bcftools-snvphyl-plugin
|
public |
The SNVPhyl (Single Nucleotide Variant PHYLogenomics) pipeline is a pipeline for identifying Single Nucleotide Variants (SNV) within a collection\ of microbial genomes and constructing a phylogenetic tree. This package is the bcftools C plugin
|
2025-04-22 |
|
mglex
|
public |
MGLEX - MetaGenome Likelihood EXtractor
|
2025-04-22 |
|
uropa
|
public |
UROPA (Universal RObust Peak Annotator) is a command line based tool, intended for genomic region annotation from e.g. peak calling.
It detects the most appropriate annotation by taking parameters such as feature type, anchor, direction and strand into account.
Furthermore, it allows filtering for GTF attribute values, e.g. protein_coding.
|
2025-04-22 |
|
hclust2
|
public |
hclust2 is a handy tool for plotting heat-maps
|
2025-04-22 |
|
qtip
|
public |
A tandem simulation approach for accurately predicting read alignment
mapping qualities.
|
2025-04-22 |
|
shovill
|
public |
Microbial assembly pipeline for Illumina paired-end reads
|
2025-04-22 |
|
riboseed
|
public |
riboSeed: assemble across rDNA regions
|
2025-04-22 |
|
disty
|
public |
Disty McMatrixface - compute a distance matrix from a core genome alignment file.
|
2025-04-22 |
|
translatorx
|
public |
Multiple alignment of nucleotide sequences guided by amino acid information
|
2025-04-22 |
|
irida-linker
|
public |
The NGS Archive Linker is a Perl script used to generate a structure of links for files stored in the IRIDA platform.
|
2025-04-22 |
|
bioconductor-beat
|
public |
BEAT - BS-Seq Epimutation Analysis Toolkit
|
2025-04-22 |
|
bioconductor-bgafun
|
public |
BGAfun A method to identify specifity determining residues in protein families
|
2025-04-22 |
|
bioconductor-bhc
|
public |
Bayesian Hierarchical Clustering
|
2025-04-22 |
|
bioconductor-bgmix
|
public |
Bayesian models for differential gene expression
|
2025-04-22 |
|
bioconductor-bgeedb
|
public |
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology
|
2025-04-22 |
|
bioconductor-beadarraysnp
|
public |
Normalization and reporting of Illumina SNP bead arrays
|
2025-04-22 |
|
bioconductor-beclear
|
public |
Correction of batch effects in DNA methylation data
|
2025-04-22 |
|
bioconductor-arraytools
|
public |
geneChip Analysis Package
|
2025-04-22 |
|
bioconductor-annotationfuncs
|
public |
Annotation translation functions
|
2025-04-22 |
