| Package Name | Access | Summary | Updated |
|---|---|---|---|
| galaxy-parsec | public | Command-line utilities to assist in interacting with Galaxy servers (http://galaxyproject.org/). | 2025-04-22 |
| justbackoff | public | Simple backoff algorithm in Python | 2025-04-22 |
| pyimzml | public | Parser for conversion of imzML 1.1.0 files | 2025-04-22 |
| pyimagingmspec | public | Python library for processing imaging mass spectrometry data | 2025-04-22 |
| afplot | public | Plot allele frequencies in VCF files | 2025-04-22 |
| bioconductor-annotationfilter | public | Facilities for Filtering Bioconductor Annotation Resources | 2025-04-22 |
| tadtool | public | TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data | 2025-04-22 |
| bioconductor-metaarray | public | Integration of Microarray Data for Meta-analysis | 2025-04-22 |
| bioconductor-metcirc | public | Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics data | 2025-04-22 |
| bioconductor-rtrmui | public | A shiny user interface for rTRM | 2025-04-22 |
| bioconductor-pcot2 | public | Principal Coordinates and Hotelling's T-Square method | 2025-04-22 |
| bioconductor-pgsea | public | Parametric Gene Set Enrichment Analysis | 2025-04-22 |
| bioconductor-plethy | public | R framework for exploration and analysis of respirometry data | 2025-04-22 |
| bioconductor-ping | public | Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data | 2025-04-22 |
| bioconductor-qualifier | public | Quality Control of Gated Flow Cytometry Experiments | 2025-04-22 |
| bioconductor-refnet | public | A queryable collection of molecular interactions, from many sources | 2025-04-22 |
| bioconductor-soggi | public | Visualise ChIP-seq, MNase-seq and motif occurrence as aggregate plots Summarised Over Grouped Genomic Intervals | 2025-04-22 |
| bioconductor-treeio | public | Base Classes and Functions for Phylogenetic Tree Input and Output | 2025-04-22 |
| bioconductor-compepitools | public | Tools for computational epigenomics | 2025-04-22 |
| cyvcf | public | A cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files | 2025-04-22 |
| bioconductor-jaspar2016 | public | Data package for JASPAR 2016 | 2025-04-22 |
| funcannot | public | Annotates cDNA, protein, mutation type, and other funcational changes to variants in a VCF file with pre-existing gene annotations (see:genepender). | 2025-04-22 |
| bioconductor-mspurity | public | Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics | 2025-04-22 |
| cgview | public | CGView is a Java package for generating high quality, zoomable maps of circular genomes. Its primary purpose is to serve as a component of sequence annotation pipelines, as a means of generating visual output suitable for the web. | 2025-04-22 |
| genepender | public | Annotates overlapping BED-defined regions to variants in a VCF file. Used primarily for providing a gene/exon context to variants (see:bedtarget). | 2025-04-22 |
