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afplot
|
public |
Plot allele frequencies in VCF files
|
2025-04-22 |
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bioconductor-annotationfilter
|
public |
Facilities for Filtering Bioconductor Annotation Resources
|
2025-04-22 |
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tadtool
|
public |
TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data
|
2025-04-22 |
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bioconductor-metaarray
|
public |
Integration of Microarray Data for Meta-analysis
|
2025-04-22 |
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bioconductor-metcirc
|
public |
Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics data
|
2025-04-22 |
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bioconductor-rtrmui
|
public |
A shiny user interface for rTRM
|
2025-04-22 |
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bioconductor-pcot2
|
public |
Principal Coordinates and Hotelling's T-Square method
|
2025-04-22 |
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bioconductor-pgsea
|
public |
Parametric Gene Set Enrichment Analysis
|
2025-04-22 |
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bioconductor-plethy
|
public |
R framework for exploration and analysis of respirometry data
|
2025-04-22 |
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bioconductor-ping
|
public |
Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data
|
2025-04-22 |
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bioconductor-qualifier
|
public |
Quality Control of Gated Flow Cytometry Experiments
|
2025-04-22 |
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bioconductor-refnet
|
public |
A queryable collection of molecular interactions, from many sources
|
2025-04-22 |
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bioconductor-soggi
|
public |
Visualise ChIP-seq, MNase-seq and motif occurrence as aggregate plots Summarised Over Grouped Genomic Intervals
|
2025-04-22 |
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bioconductor-treeio
|
public |
Base Classes and Functions for Phylogenetic Tree Input and Output
|
2025-04-22 |
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bioconductor-compepitools
|
public |
Tools for computational epigenomics
|
2025-04-22 |
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cyvcf
|
public |
A cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files
|
2025-04-22 |
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bioconductor-jaspar2016
|
public |
Data package for JASPAR 2016
|
2025-04-22 |
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funcannot
|
public |
Annotates cDNA, protein, mutation type, and other funcational changes to variants in a VCF file with pre-existing gene annotations (see:genepender).
|
2025-04-22 |
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bioconductor-mspurity
|
public |
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
|
2025-04-22 |
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cgview
|
public |
CGView is a Java package for generating high quality, zoomable maps of circular genomes.
Its primary purpose is to serve as a component of sequence annotation pipelines, as a
means of generating visual output suitable for the web.
|
2025-04-22 |
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genepender
|
public |
Annotates overlapping BED-defined regions to variants in a VCF file. Used primarily for providing a gene/exon context to variants (see:bedtarget).
|
2025-04-22 |
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coprarna
|
public |
Target prediction for prokaryotic trans-acting small RNAs
|
2025-04-22 |
|
r-mqtl
|
public |
mQTL provides a complete QTL analysis pipeline for metabolomic data. Distinctive features include normalisation using PQN approach, peak alignment using RSPA approach, dimensionality reduction using SRV approach and finally QTL mapping using R/qtl package.
|
2025-04-22 |
|
bioconductor-delayedarray
|
public |
A unified framework for working transparently with on-disk and in-memory array-like datasets
|
2025-04-22 |
|
misopy
|
public |
Mixture of Isoforms model (MISO) for isoform quantitation using RNA-Seq
|
2025-04-22 |
