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tdrmapper
|
public |
tRNA detection and quantification
|
2023-06-16 |
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mapsplice
|
public |
MapSplice is a software for mapping RNA-seq data to reference genome for splice junction discovery that depends only on reference genome, and not on any further annotations.
|
2023-06-16 |
|
perl-bioperl
|
public |
Bioinformatics Toolkit
|
2023-06-16 |
|
perl-lwp-protocol-https
|
public |
Provide https support for LWP::UserAgent
|
2023-06-16 |
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mosaik
|
public |
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome.
|
2023-06-16 |
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bcbio-nextgen
|
public |
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
|
2023-06-16 |
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filechunkio
|
public |
FileChunkIO represents a chunk of an OS-level file containing bytes data
|
2023-06-16 |
|
dropbox
|
public |
Official Dropbox API Client
|
2023-06-16 |
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slang
|
public |
No Summary
|
2023-06-16 |
|
seqcluster
|
public |
small RNA analysis from NGS data
|
2023-06-16 |
|
mothur
|
public |
This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.
|
2023-06-16 |
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sphinxcontrib-programoutput
|
public |
Sphinx extension to include program output
|
2023-06-16 |
|
inheritance
|
public |
inheritance models for mendelian diseases
|
2023-06-16 |
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bcbio-prioritize
|
public |
Prioritize small variants, structural variants and coverage based on biological inputs
|
2023-06-16 |
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perl-file-fetch
|
public |
Generic file fetching code
|
2023-06-16 |
|
perl-file-sharedir-install
|
public |
Install shared files
|
2023-06-16 |
|
perl-encode-locale
|
public |
Determine the locale encoding
|
2023-06-16 |
|
perl-compress-raw-zlib
|
public |
Basic utilities for writing tests.
|
2023-06-16 |
|
perl-file-sharedir
|
public |
Locate per-dist and per-module shared files
|
2023-06-16 |
|
perl-archive-extract
|
public |
Generic archive extracting mechanism
|
2023-06-16 |
|
parallel
|
public |
No Summary
|
2023-06-16 |
|
perl-gdgraph
|
public |
Produces charts with GD
|
2023-06-16 |
|
simple_sv_annotation
|
public |
Simplify snpEff annotations for interesting cases
|
2023-06-16 |
|
cufflinks
|
public |
Transcriptome assembly and differential expression analysis for RNA-Seq.
|
2023-06-16 |
|
blat
|
public |
BLAT is a bioinformatics software tool which performs rapid mRNA/DNA and cross-species protein alignments.
|
2023-06-16 |
|
gatk-framework
|
public |
The core MIT-licensed Genome Analysis Toolkit (GATK) framework, free for all uses
|
2023-06-16 |
|
vardict-java
|
public |
Java port of the VarDict variant discovery program
|
2023-06-16 |
|
flash
|
public |
Merge mates from fragments that are shorter than twice the read length
|
2023-06-16 |
|
setuptools_cython
|
public |
Cython setuptools integration
|
2023-06-16 |
|
pyx
|
public |
Python package for the generation of PostScript, PDF, and SVG files
|
2023-06-16 |
|
bcbio-variation-recall
|
public |
Parallel merging, squaring off and ensemble calling for genomic variants
|
2023-06-16 |
|
hifive
|
public |
Python library for normalizing and analyzing HiC and 5C data
|
2023-06-16 |
|
sailfish
|
public |
Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
|
2023-06-16 |
|
perl-ipc-system-simple
|
public |
Run commands simply, with detailed diagnostics
|
2023-06-16 |
|
r-flowr
|
public |
This framework allows you to design and implement complex pipelines, and deploy them on your institution's computing cluster. This has been built keeping in mind the needs of bioinformatics workflows. However, it is easily extendable to any field where a series of steps (shell commands) are to be executed in a (work)flow.
|
2023-06-16 |
|
intervalstats
|
public |
Tool for assessing similarity between sets of intervals
|
2023-06-16 |
|
perl-scalar-list-utils
|
public |
Common Scalar and List utility subroutines
|
2023-06-16 |
|
perl-uri
|
public |
Uniform Resource Identifiers (absolute and relative)
|
2023-06-16 |
|
pyasn1-modules
|
public |
a small but growing collection of ASN.1 data structures expressed in Python terms using pyasn1 data model
|
2023-06-16 |
|
perl-archive-zip
|
public |
Provide an interface to ZIP archive files.
|
2023-06-16 |
|
perl-threaded
|
public |
The Perl language.
|
2023-06-16 |
|
pyvcf
|
public |
A Variant Call Format reader for Python
|
2023-06-16 |
|
bcbreport
|
public |
Rmd templates for bcbio-nextgen analysis
|
2023-06-16 |
|
bmtagger
|
public |
BMTagger aka Best Match Tagger is for removing human reads from metagenomics datasets
|
2023-06-16 |
|
r-tximport
|
public |
Import and summarize transcript-level estimates for gene-level analysis
|
2023-06-16 |
|
r-gsalib
|
public |
This package contains utility functions used by the Genome Analysis Toolkit (GATK) to load tables and plot data. The GATK is a toolkit for variant discovery in high-throughput sequencing data.
|
2023-06-16 |
|
r-ash
|
public |
David Scott's ASH routines ported from S-PLUS to R.
|
2023-06-16 |
|
r-misc3d
|
public |
A collection of miscellaneous 3d plots, including isosurfaces.
|
2023-06-16 |
|
ftputil
|
public |
High-level FTP client library (virtual file system and more)
|
2023-06-16 |
|
mageck-vispr
|
public |
MAGeCK-VISPR is a comprehensive quality control, analysis and visualization workflow for CRISPR/Cas9 screens based on MAGeCK, VISPR, Snakemake, FastQC and cutadapt.
|
2023-06-16 |
