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argutils
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public |
Functions to build matched argument parsers and config files
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2023-06-16 |
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wtforms-alchemy
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public |
Generates WTForms forms from SQLAlchemy models.
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2023-06-16 |
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eigen
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public |
Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
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2023-06-16 |
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r-corrplot
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public |
The corrplot package is a graphical display of a correlation matrix, confidence interval. It also contains some algorithms to do matrix reordering.
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2023-06-16 |
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r-fftwtools
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public |
Provides a wrapper for several FFTW functions. This package provides access to the two-dimensional FFT, the multivariate FFT, and the one-dimensional real to complex FFT using FFTW3. The package includes the functions fftw and mvfftw which are designed to mimic the functionality of the R functions fft and mvfft. The FFT functions have a parameter that allows them to not return the redundant complex conjugate when the input is real data.
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2023-06-16 |
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google-sparsehash
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public |
Several hash-map implementations.
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2023-06-16 |
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ant
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public |
Apache Ant is a Java library and command-line tool that help building software.
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2023-06-16 |
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r-ore
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public |
Provides an alternative to R's built-in functionality for handling regular expressions, based on the Oniguruma library. Offers first-class compiled regex objects, partial matching and function-based substitutions, amongst other features.
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2023-06-16 |
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kid
|
public |
A simple and pythonic XML template language
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2023-06-16 |
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bioservices
|
public |
Access to Biological Web Services from Python
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2023-06-16 |
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gnuplot
|
public |
Gnuplot, plotting from command line
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2023-06-16 |
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suds-jurko
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public |
Lightweight SOAP client (Jurko's fork)
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2023-06-16 |
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samsifter
|
public |
Workflow editor for metagenomic analysis
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2023-06-16 |
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python-weblogo
|
public |
Tool for creating sequence logos from biological sequence alignments
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2023-06-16 |
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screamingbackpack
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public |
ScreamingBackpack
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2023-06-16 |
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web.py
|
public |
web.py makes web apps
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2023-06-16 |
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ggplot
|
public |
An extremely un-pythonic package for doing exactly what ggplot2 does
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2023-06-16 |
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hurry.filesize
|
public |
A simple Python library for human readable file sizes (or anything sized in bytes).
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2023-06-16 |
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typing
|
public |
Type Hints for Python
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2023-06-16 |
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express
|
public |
eXpress is a streaming DNA/RNA sequence quantification tool.
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2023-06-16 |
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rdflib-jsonld
|
public |
rdflib extension adding JSON-LD parser and serializer
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2023-06-16 |
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mhap
|
public |
MHAP: MinHash Alignment Protocol. A tool for finding overlaps of long-read sequences (such as PacBio or Nanopore) in bioinformatics.
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2023-06-16 |
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ruffus
|
public |
Light-weight Python Computational Pipeline Management
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2023-06-16 |
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rdflib
|
public |
RDFLib is a pure Python package work working with RDF
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2023-06-16 |
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denovogear
|
public |
A program to detect denovo-variants using next-generation sequencing data.
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2023-06-16 |
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cobra
|
public |
COBRApy is a package for constraint-based modeling of biological networks.
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2023-06-16 |
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yahmm
|
public |
YAHMM is a HMM package for Python, implemented in Cython for speed.
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2023-06-16 |
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burrito-fillings
|
public |
burrito-fillings: burrito application controllers for bioinformatics
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2023-06-16 |
|
pypore
|
public |
Pythonic/Cythonic Nanopore Translocation Analysis
|
2023-06-16 |
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ciso8601
|
public |
Fast ISO8601 date time parser for Python written in C
|
2023-06-16 |
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qiime-default-reference
|
public |
Default reference data files for use with QIIME.
|
2023-06-16 |
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shellescape
|
public |
Shell escape a string to safely use it as a token in a shell command (backport of Python shlex.quote for Python versions 2.x & < 3.3)
|
2023-06-16 |
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burrito
|
public |
Framework for wrapping and controlling command-line applications.
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2023-06-16 |
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pyqi
|
public |
pyqi: expose your interface
|
2023-06-16 |
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r-vegan
|
public |
Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
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2023-06-16 |
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glob2
|
public |
Version of the glob module that can capture patterns and supports recursive wildcards
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2023-06-16 |
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avro
|
public |
Avro is a serialization and RPC framework.
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2023-06-16 |
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collectl
|
public |
collectl monitoring tool
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2023-06-16 |
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spectacle
|
public |
This software implements a spectral learning algorithm for hidden Markov models for epigenomic data. Please see our paper for further details: Song, J and Chen, K. C. Spectacle: fast chromatin state annotation using spectral learning. Genome Biology, 16:33, 2015. http://genomebiology.com/2015/16/1/33
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2023-06-16 |
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backports.csv
|
public |
Backport of Python 3 csv module
|
2023-06-16 |
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gevent
|
public |
Coroutine-based network library
|
2023-06-16 |
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requests-cache
|
public |
Persistent cache for requests library
|
2023-06-16 |
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skewer
|
public |
A fast and accurate adapter trimmer for next-generation sequencing paired-end reads.
|
2023-06-16 |
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esmre
|
public |
Regular expression accelerator
|
2023-06-16 |
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r-readmzxmldata
|
public |
Functions for reading mass spectrometry data in mzXML format.
|
2023-06-16 |
|
swga
|
public |
Select primer sets for selective whole genome amplification (SWGA)
|
2023-06-16 |
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r-readbrukerflexdata
|
public |
Reads data files acquired by Bruker Daltonics' matrix-assisted laser desorption/ionization-time-of-flight mass spectrometer of the *flex series.
|
2023-06-16 |
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perl-devel-globaldestruction
|
public |
Provides function returning the equivalent of ${^GLOBAL_PHASE} eq 'DESTRUCT' for older perls.
|
2023-06-16 |
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perl-authen-sasl-saslprep
|
public |
A Stringprep Profile for User Names and Passwords (RFC 4013)
|
2023-06-16 |
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r-biasedurn
|
public |
Statistical models of biased sampling in the form of univariate and multivariate noncentral hypergeometric distributions, including Wallenius' noncentral hypergeometric distribution and Fisher's noncentral hypergeometric distribution (also called extended hypergeometric distribution). See vignette("UrnTheory") for explanation of these distributions.
|
2023-06-16 |
