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bioconductor-prot2d
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public |
The purpose of this package is to analyze (i.e. Normalize and select significant spots) data issued from 2D GEl experiments
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2025-04-22 |
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bioconductor-process
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public |
Ciphergen SELDI-TOF Processing
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2025-04-22 |
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bioconductor-pwomics
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public |
Pathway-based data integration of omics data
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2025-04-22 |
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bioconductor-icens
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public |
NPMLE for Censored and Truncated Data
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2025-04-22 |
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bioconductor-psygenet2r
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public |
psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
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2025-04-22 |
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bioconductor-regsplice
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public |
L1-regularization based methods for detection of differential splicing
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2025-04-22 |
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epicseg
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public |
EpiCSeg (Epigenome Count-based Segmentation) is a software for annotating the genome based on the state of the chromatin. It provides tools for extracting count data from BAM files, typlically corresponding to ChIP-seq experiments for histone marks (but other choices are possible) it learns a statistical model for the read counts based on a HMM, it annotates the genome, and it provides tools for displaying and analyzing the obtained models and segmentations. EpiCSeg can be used as an R package or from the command line via Rscript.
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2025-04-22 |
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bis-snp-utils
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public |
bis-snp-utils are support tools for Bis-SNP
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2025-04-22 |
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bioconductor-a4base
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public |
Automated Affymetrix Array Analysis Base Package
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2025-04-22 |
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bioconductor-a4reporting
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public |
Automated Affymetrix Array Analysis Reporting Package
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2025-04-22 |
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bioconductor-refplus
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public |
A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.
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2025-04-22 |
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bioconductor-ggtools
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public |
software and data for analyses in genetics of gene expression
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2025-04-22 |
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bioconductor-ggbase
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public |
GGBase infrastructure for genetics of gene expression package GGtools
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2025-04-22 |
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bioconductor-gewist
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public |
Gene Environment Wide Interaction Search Threshold
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2025-04-22 |
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bioconductor-globalancova
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public |
Global test for groups of variables via model comparisons
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2025-04-22 |
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bioconductor-gmrp
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public |
GWAS-based Mendelian Randomization and Path Analyses
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2025-04-22 |
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bioconductor-gofunction
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public |
GO-function: deriving biologcially relevant functions from statistically significant functions
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2025-04-22 |
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kfoots
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public |
The package provides methods for fitting multivariate count data with a mixture model or a hidden markov model. Each mixture component is a negative multivariate random variable and an EM algorithm is used to maximize the likelihood.
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2025-04-22 |
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bioconductor-bamsignals
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public |
Extract read count signals from bam files
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2025-04-22 |
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bioconductor-brain
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public |
Baffling Recursive Algorithm for Isotope distributioN calculations
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2025-04-22 |
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r-seurat
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public |
A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.
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2025-04-22 |
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refseq_masher
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public |
refseq_masher finds what NCBI RefSeq genomes match or are contained within your sequence data using Mash
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2025-04-22 |
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kodoja
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public |
Kodoja: identifying viruses from plant RNA sequencing data
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2025-04-22 |
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rebaler
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public |
Reference-based long read assemblies of bacterial genomes
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2025-04-22 |
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clonalframeml
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public |
Efficient inferencing of recombination in bacterial genomes
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2025-04-22 |
