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icount
|
public |
Computational pipeline for analysis of iCLIP data
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2025-04-22 |
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biopet-basecounter
|
public |
BaseCounter counts the bases from genes and transcripts and outputs information on the counts in exonic and intronic regions as well as information on the counts on the sense and antisense strands.
|
2025-04-22 |
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sshmm
|
public |
ssHMM is an RNA motif finder that recovers sequence-structure motifs from RNA-binding protein data, such as CLIP-Seq data.
|
2025-04-22 |
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gbsx
|
public |
Toolkit for experimental design and demultiplexing genotyping by sequencing experiments
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2025-04-22 |
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anndata
|
public |
An annotated data matrix.
|
2025-04-22 |
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alignstats
|
public |
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
|
2025-04-22 |
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biopet-seattleseqkit
|
public |
#### Tool - Filter This tool can filter a seattle seq file.
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2025-04-22 |
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mauvealigner
|
public |
The mauveAligner and progressiveMauve command-line tools for generating multiple genome alignments in the presence of large-scale evolutionary events
|
2025-04-22 |
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phenix
|
public |
Public Health England SNP calling pipeline
|
2025-04-22 |
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metaquant
|
public |
Quantitative microbiome analysis
|
2025-04-22 |
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scvi
|
public |
Single-cell Variational Inference
|
2025-04-22 |
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perl-string-random
|
public |
Perl module to generate random strings based on a pattern
|
2025-04-22 |
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ucsc-bedjointaboffset
|
public |
given a bed file and tab file where each have a column with matching values: first get the value of column0, the offset and line length from inTabFile. Then go over the bed file, use the name field and append its offset and length to the bed file as two separate fields. Write the new bed file to outBed.
|
2025-04-22 |
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ucsc-endsinlf
|
public |
Check that last letter in files is end of line
|
2025-04-22 |
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ucsc-gensub2
|
public |
version 12.18
|
2025-04-22 |
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ucsc-para
|
public |
version 12.18
|
2025-04-22 |
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ucsc-parahub
|
public |
parasol hub server version 12.18
|
2025-04-22 |
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ucsc-websync
|
public |
download from https server, using files.txt on their end to get the list of files
|
2025-04-22 |
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biopet-fastqsplitter
|
public |
This tool divides a fastq file into smaller fastq files, based on the number of output files specified.
|
2025-04-22 |
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pmdtools
|
public |
Compute postmortem damage patterns and decontaminate ancient genomes
|
2025-04-22 |
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biopet-scatterregions
|
public |
This tool breaks a reference or bed file into smaller scatter regions of equal size.
|
2025-04-22 |
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pasa
|
public |
PASA, acronym for Program to Assemble Spliced Alignments (and pronounced 'pass-uh'), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.
|
2025-04-22 |
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atactk
|
public |
A toolkit for working with ATAC-seq data.
|
2025-04-22 |
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fastphylo
|
public |
Fastphylo is software project containing the implementations of the algorithms "Fast Computation of Distance Estimators" and "Fast Neighbor Joining".
|
2025-04-22 |
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biopet-validatefastq
|
public |
This tool validates a FASTQ file.
|
2025-04-22 |
