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smeg
|
public |
Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
|
2023-06-16 |
|
dadi
|
public |
Fit population genetic models using diffusion approximations to the allele frequency spectrum
|
2023-06-16 |
|
rpf-count-cds
|
public |
A python script for counting RPF reads map to CDS region.
|
2023-06-16 |
|
scvi
|
public |
Single-cell Variational Inference
|
2023-06-16 |
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perl-snap
|
public |
SNAP calculates pairwise synonymous and nonsynonymous distances according to the Nei and Gojobori method for an alignment in table format.
|
2023-06-16 |
|
phame
|
public |
A tool to derive SNP matrices and phylogenetic tree from raw reads, contigs, and full genomes.
|
2023-06-16 |
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delegation
|
public |
Simple implementation of the delegate pattern.
|
2023-06-16 |
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mccortex
|
public |
De novo genome assembly and multisample variant calling
|
2023-06-16 |
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libarbdb
|
public |
ARB 6 Sequence Analysis Suite
|
2023-06-16 |
|
genclust
|
public |
A genetic algorithm for clustering gene expression data.
|
2023-06-16 |
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arb-bio-tools
|
public |
ARB 6 Sequence Analysis Suite
|
2023-06-16 |
|
arb-bio-devel
|
public |
ARB 6 Sequence Analysis Suite
|
2023-06-16 |
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python-rnacentral
|
public |
This tool exploits the RNAcentral public APIs to automatically retrieve sequences (converted to the FASTA format) and the related metadata, starting with one or a list of RNAcentral IDs
|
2023-06-16 |
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smcounter2
|
public |
smCounter2: an accurate low-frequency variant caller for targeted sequencing data with unique molecular identifiers
|
2023-06-16 |
|
bandage
|
public |
Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
|
2023-06-16 |
|
ghost-tree
|
public |
ghost-tree is a bioinformatics tool that combines sequence data from two
genetic marker databases into one phylogenetic tree that can be used for
diversity analyses.
|
2023-06-16 |
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shannon
|
public |
A program for assembling transcripts from RNA-Seq data.
|
2023-06-16 |
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perl-math-random-mt-auto
|
public |
Auto-seeded Mersenne Twister PRNGs
|
2023-06-16 |
|
showit
|
public |
simple and sensible display of images in python
|
2023-06-16 |
|
perl-business-isbn
|
public |
work with International Standard Book Numbers
|
2023-06-16 |
|
perl-mac-systemdirectory
|
public |
Locate Mac OS X Standard System Directories
|
2023-06-16 |
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perl-sub-quote
|
public |
Efficient generation of subroutines via string eval
|
2023-06-16 |
|
perl-sys-info
|
public |
Fetch information from the host system
|
2023-06-16 |
|
perl-sys-info-driver-osx
|
public |
OSX driver for Sys::Info
|
2023-06-16 |
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perl-devel-assert
|
public |
assertions for Perl >= 5.14
|
2023-06-16 |
|
perl-sys-info-base
|
public |
Base class for Sys::Info
|
2023-06-16 |
|
perl-carp-clan
|
public |
Report errors from perspective of caller of a "clan" of modules
|
2023-06-16 |
|
regional
|
public |
simple manipulation and display of spatial regions in python
|
2023-06-16 |
|
perl-string-truncate
|
public |
a module for when strings are too long to be displayed in...
|
2023-06-16 |
|
focus
|
public |
FOCUS is an innovative and agile model to profile and report organisms present in metagenomic samples based on composition usage without sequence length dependencies.
|
2023-06-16 |
|
perl-sub-exporter-formethods
|
public |
helper routines for using Sub::Exporter to build methods
|
2023-06-16 |
|
perl-mac-propertylist
|
public |
work with Mac plists at a low level
|
2023-06-16 |
|
perl-business-isbn-data
|
public |
data pack for Business::ISBN
|
2023-06-16 |
|
fithic
|
public |
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome architecture assays.
|
2023-06-16 |
|
perl-object-insideout
|
public |
Comprehensive inside-out object support module
|
2023-06-16 |
|
perl-math-complex
|
public |
trigonometric functions
|
2023-06-16 |
|
perl-test-sys-info
|
public |
Centralized test suite for Sys::Info.
|
2023-06-16 |
|
perl-string-rewriteprefix
|
public |
rewrite strings based on a set of known prefixes
|
2023-06-16 |
|
perl-heap
|
public |
Perl extensions for keeping data partially sorted
|
2023-06-16 |
|
perl-xml-entities
|
public |
Mapping of XML entities to Unicode
|
2023-06-16 |
|
perl-module-list
|
public |
module `directory' listing
|
2023-06-16 |
|
r-raceid
|
public |
Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the StemID2 algorithm.
|
2023-06-16 |
|
perl-moosex-types-stringlike
|
public |
Moose type constraints for strings or string-like objects
|
2023-06-16 |
|
r-fateid
|
public |
Application of 'FateID' allows computation and visualization of cell fate bias for multi-lineage single cell transcriptome data. Herman, J.S., Sagar, Grün D. (2017) <DOI:10.1038/nmeth.4662>.
|
2023-06-16 |
|
perl-slurp
|
public |
Slurp entire files into variables
|
2023-06-16 |
|
perl-data-munge
|
public |
various utility functions
|
2023-06-16 |
|
perl-module-pluggable
|
public |
automatically give your module the ability to have plugins
|
2023-06-16 |
|
perl-file-copy-recursive-reduced
|
public |
Recursive copying of files and directories within Perl 5 toolchain
|
2023-06-16 |
|
perl-sub-info
|
public |
Tool for inspecting subroutines.
|
2023-06-16 |
|
perl-moosex-role-parameterized
|
public |
Moose roles with composition parameters
|
2023-06-16 |
