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skmer
|
public |
Assembly-free and alignment-free tool for estimating genomic distances between genome-skims
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2023-06-16 |
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xpclr
|
public |
Code to compute xp-clr values to detect selection as per Chen, Patterson & Reich 2010.
|
2023-06-16 |
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bioconductor-geneticsdesign
|
public |
Functions for designing genetics studies
|
2023-06-16 |
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mirtrace
|
public |
miRTrace is a new quality control and taxonomic tracing tool developed specifically for small RNA sequencing data (sRNA-Seq).
Each sample is characterized by profiling sequencing quality, read length, sequencing depth and miRNA complexity and also the
amounts of miRNAs versus undesirable sequences (derived from tRNAs, rRNAs and sequencing artifacts). In addition to these routine
quality control (QC) analyses, miRTrace can accurately and sensitively resolve taxonomic origins of small RNA-Seq data based on the
composition of clade-specific miRNAs. This feature can be used to detect cross-clade contaminations in typical lab settings. It can
also be applied for more specific applications in forensics, food quality control and clinical diagnosis, for instance tracing the
origins of meat products or detecting parasitic microRNAs in host serum.
|
2023-06-16 |
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bioconductor-pint
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public |
Pairwise INTegration of functional genomics data
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2023-06-16 |
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bioconductor-lol
|
public |
Lots Of Lasso
|
2023-06-16 |
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perl-probe-perl
|
public |
Information about the currently running perl
|
2023-06-16 |
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bioconductor-pbase
|
public |
Manipulating and exploring protein and proteomics data
|
2023-06-16 |
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bioconductor-yaqcaffy
|
public |
Affymetrix expression data quality control and reproducibility analysis
|
2023-06-16 |
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bioconductor-proteomicsannotationhubdata
|
public |
Transform public proteomics data resources into Bioconductor Data Structures
|
2023-06-16 |
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sbg-cwl-runner
|
public |
A CWL Runner for SBG platform
|
2023-06-16 |
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refinem
|
public |
A toolbox for improving population genomes.
|
2023-06-16 |
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perl-test-script
|
public |
Basic cross-platform tests for scripts
|
2023-06-16 |
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perl-bio-rna-rnaalisplit
|
public |
Split and deconvolute structural RNA multiple sequence alignments
|
2023-06-16 |
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nullarbor
|
public |
Reads to report pipeline for bacterial isolate NGS data
|
2023-06-16 |
|
bioconductor-scisi
|
public |
In Silico Interactome
|
2023-06-16 |
|
bioconductor-missmethyl
|
public |
Analysing Illumina HumanMethylation BeadChip Data
|
2023-06-16 |
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bioconductor-cve
|
public |
Cancer Variant Explorer
|
2023-06-16 |
|
bioconductor-slgi
|
public |
Synthetic Lethal Genetic Interaction
|
2023-06-16 |
|
bioconductor-pcpheno
|
public |
Phenotypes and cellular organizational units
|
2023-06-16 |
|
bioconductor-ppistats
|
public |
Protein-Protein Interaction Statistical Package
|
2023-06-16 |
|
bioconductor-genogam
|
public |
A GAM based framework for analysis of ChIP-Seq data
|
2023-06-16 |
|
bioconductor-dbchip
|
public |
Differential Binding of Transcription Factor with ChIP-seq
|
2023-06-16 |
|
meta-sparse
|
public |
SPARSE indexes reference genomes in public databases into hierarchical clusters and uses it to predict origins of metagenomic reads.
|
2023-06-16 |
|
bioconductor-ggbase
|
public |
GGBase infrastructure for genetics of gene expression package GGtools
|
2023-06-16 |
|
nemo
|
public |
Individual-based forward-time genetics simulation software
|
2023-06-16 |
|
goenrichment
|
public |
GOEnrichment analyses a set of gene products for GO term enrichment
|
2023-06-16 |
|
scaffold_builder
|
public |
Scaffold_builder: Combining de novo and reference-guided assembly with Scaffold_builder.
|
2023-06-16 |
|
goslimmer
|
public |
GOSlimmer transforms GO annotations to a slimmed version of GO
|
2023-06-16 |
|
bioconductor-ggtools
|
public |
software and data for analyses in genetics of gene expression
|
2023-06-16 |
|
sample-sheet
|
public |
An Illumina Sample Sheet parsing library
|
2023-06-16 |
|
perl-text-template-simple
|
public |
Simple text template engine
|
2023-06-16 |
|
bioconductor-mesh.db
|
public |
A set of annotation maps describing the entire MeSH
|
2023-06-16 |
|
perl-sys-info-driver-linux
|
public |
Linux driver for Sys::Info
|
2023-06-16 |
|
bioconductor-rmir
|
public |
Package to work with miRNAs and miRNA targets with R
|
2023-06-16 |
|
enabrowsertools
|
public |
enaBrowserTools is a set of scripts that interface with the ENA web services to download data from ENA easily
|
2023-06-16 |
|
vkmz
|
public |
metabolomics formula prediction and van Krevelen diagram generation
|
2023-06-16 |
|
perl-array-set
|
public |
Perform set operations on arrays
|
2023-06-16 |
|
damageprofiler
|
public |
A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
|
2023-06-16 |
|
bcool
|
public |
BCOOL is a read corrector for NGS sequencing data that align reads on a de Bruijn graph. Version described at (https://arxiv.org/abs/1711.03336) presented at RECOMB-seq 2018
|
2023-06-16 |
|
bioconductor-focalcall
|
public |
Detection of focal aberrations in DNA copy number data
|
2023-06-16 |
|
bioconductor-deepbluer
|
public |
DeepBlueR
|
2023-06-16 |
|
biothings_client
|
public |
Python Client for BioThings API services.
|
2023-06-16 |
|
hiddendomains
|
public |
hiddenDomains is a suite of programs used to identify significant enrichment of ChIP-seq reads that span large domains.
|
2023-06-16 |
|
topas
|
public |
This toolkit allows the efficient manipulation of sequence data in various ways. It is organized into modules: The FASTA processing modules, the FASTQ processing modules, the GFF processing modules and the VCF processing modules.
|
2023-06-16 |
|
bioconductor-mcrestimate
|
public |
Misclassification error estimation with cross-validation
|
2023-06-16 |
|
seqmap
|
public |
SeqMap is a tool for mapping large amount of oligonucleotide to the genome.
|
2023-06-16 |
|
python-intervaltree
|
public |
Faster than intervaltree_bio
|
2023-06-16 |
|
sparcc
|
public |
SparCC is a python module for computing correlations in compositional data (16S, metagenomics, etc).
|
2023-06-16 |
|
bioconductor-lvsmirna
|
public |
LVS normalization for Agilent miRNA data
|
2023-06-16 |
