|
dnp-fourier
|
public |
Periodogram of dinucleotide frequency pattern
|
2025-04-22 |
|
dnp-diprofile
|
public |
Dinucleotide frequency of occurrence in a batch of fasta sequences
|
2025-04-22 |
|
dnp-corrprofile
|
public |
Profile of correlations between the patterns of dinucleotide frequency on forward and reverse strands
|
2025-04-22 |
|
dnp-binstrings
|
public |
Convert fasta strings into dinucleotide binary indicator string as 00101...
|
2025-04-22 |
|
htstream
|
public |
HTStream is a quality control and processing pipeline for High Throughput Sequencing data.
The difference between HTStream and other tools is that HTStream uses a tab delimited fastq format that allows for streaming from application to application.
This streaming creates some awesome efficiencies when processing HTS data and makes it fully interoperable with other standard Linux tools.
|
2025-04-22 |
|
bazam
|
public |
A tool to extract paired reads in FASTQ format from coordinate sorted BAM files
|
2025-04-22 |
|
anvio-minimal
|
public |
An interactive analysis and visualization platform for omics data
|
2025-04-22 |
|
fsm-lite
|
public |
Frequency-based String Mining (lite)
|
2025-04-22 |
|
purge_haplotigs
|
public |
Pipeline to help with curating heterozygous diploid genome assemblies.
|
2025-04-22 |
|
perl-gtdbtk
|
public |
Perl script and dependent library files required for GTDB-Tk.
|
2025-04-22 |
|
tinyfasta
|
public |
Tiny Python package, with no external dependencies, for parsing FASTA sequence files.
|
2025-04-22 |
|
kinsimriboswitch
|
public |
Pipeline for the simulation of RNA--ligand interaction kinetics as
outlined in Kuehnl et al. 2017, https://doi.org/10.1186/s12859-017-1823-5
|
2025-04-22 |
|
r-msqrob
|
public |
Robust statistical inference for quantitative LC-MS proteomics.
|
2025-04-22 |
|
rapidnj
|
public |
RapidNJ is an algorithmic engineered implementation of canonical neighbour-joining. It uses an efficient search heuristic to speed-up the core computations of the neighbour-joining method that enables RapidNJ to outperform other state-of-the-art neighbour-joining implementations.
|
2025-04-22 |
|
r-dgeclustering
|
public |
DGEclustering is an R package for multidimensional clustering of differential gene expression datasets, and it integrates GO annotations to improve the clustering result.
|
2025-04-22 |
|
bioconductor-sc3-scripts
|
public |
A set of wrappers for individual components of the SC3 package. Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.
|
2025-04-22 |
|
admixture
|
public |
ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets.
|
2025-04-22 |
|
revtrans
|
public |
revtrans - performs a reverse translation of a peptide alignment.
|
2025-04-22 |
|
slimm
|
public |
SLIMM - Species Level Identification of Microbes from Metagenomes
|
2025-04-22 |
|
perl-bundle-bioperl
|
public |
A bundle to install external CPAN modules used by BioPerl 1.5.2
|
2025-04-22 |
|
bpp-popgen
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2025-04-22 |
|
red
|
public |
Red (RepeatsDetector): an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
|
2025-04-22 |
|
truvari
|
public |
Structural variant comparison tool for VCFs.
|
2025-04-22 |
|
gatktool
|
public |
Functions and classes used to extend a GATK tool with Python
|
2025-04-22 |
|
metaxa
|
public |
Improved Identification and Taxonomic Classification of Small and Large Subunit rRNA in Metagenomic Data.
|
2025-04-22 |
