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dig2
|
public |
dig2 is a simple but flexible in silico digester of protein sequences in the FASTA format. It allows for almost any enzyme to be simulated, including MS/MS enzymes to generate CID or ECD/ETD fragments.
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2024-12-11 |
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ssu-align
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public |
SSU-ALIGN: structural alignment of SSU rRNA sequences
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2024-12-11 |
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pandaseq
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public |
No Summary
|
2024-12-11 |
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solexaqa
|
public |
Quality statistics and visual representations for second-generation sequencing data
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2024-12-11 |
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biodiff
|
public |
exact comparison of biological sequences
|
2024-12-11 |
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clark
|
public |
Fast, accurate and versatile k-mer based classification system
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2024-12-10 |
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hmmer2
|
public |
No Summary
|
2024-12-10 |
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guidescan
|
public |
GuideScan is a tool for genome-wide CRISPR guide RNA (gRNA) design and analysis in custom genomes.
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2024-12-10 |
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porechop
|
public |
Adapter removal and demultiplexing of Oxford Nanopore reads
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2024-12-10 |
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fermi-lite
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public |
Fermi-lite is a standalone C library as well as a command-line tool for assembling Illumina short reads in regions from 100bp to 10 million bp in size.
|
2024-12-10 |
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sts-smctc
|
public |
A C++ template class library for the efficient and convenient implementation of very general Sequential Monte Carlo algorithms.
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2024-12-10 |
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gecode
|
public |
Generic constraint development environment
|
2024-12-10 |
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ucsc-liftover
|
public |
Move annotations from one assembly to another
|
2024-12-10 |
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vargeno
|
public |
Fast SNP genotyping tool for whole genome sequence data and large SNP database.
|
2024-12-10 |
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treemix
|
public |
TreeMix is a method for inferring the patterns of population splits and mixtures in the history of a set of populations.
|
2024-12-10 |
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soapdenovo2-prepare
|
public |
SoapDenovo2 Data prepare module using assembled contig to do scaffold assembly
|
2024-12-10 |
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ucsc-beditemoverlapcount
|
public |
count number of times a base is overlapped by the
|
2024-12-10 |
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ucsc-pslsort
|
public |
Merge and sort psCluster .psl output files
|
2024-12-10 |
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sumaclust
|
public |
Sumaclust clusters sequences in a way that is fast and exact at the same time, using the same clustering algorithm as UCLUST and CD-HIT. For more information see url.
|
2024-12-10 |
|
ldhelmet
|
public |
Software program for statistical inference of fine-scale crossover recombination rates from population genetic data.
|
2024-12-10 |
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r-pctgcdata
|
public |
Provides GC percentage of a 1 kilobase window at a genomic position for different builds of human and mouse genomes.
|
2024-12-10 |
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libgenome
|
public |
A C++ development library designed to make common operations on DNA and protein sequences easy. libGenome provides functionality to read, write, and manipulate sequence and annotation data in several file formats.
|
2024-12-10 |
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align_it
|
public |
Align-it is a tool to align molecules according to their pharmacophores. A pharmacophore is an abstract concept based on the specific interactions observed in drug-receptor interactions: hydrogen bonding, charge transfer, electrostatic and hydrophobic interactions.
|
2024-12-10 |
|
ecoprimers
|
public |
No Summary
|
2024-12-10 |
|
slimm
|
public |
SLIMM - Species Level Identification of Microbes from Metagenomes
|
2024-12-10 |
|
moods
|
public |
MOODS: Motif Occurrence Detection Suite
|
2024-12-10 |
|
merlin
|
public |
MERLIN uses sparse trees to represent gene flow in pedigrees and is a fast pedigree analysis package
|
2024-12-10 |
|
apt-probeset-summarize
|
public |
From Affymetrix Power Tools package. apt-probeset-summarize is program for analyzing expression arrays including 3' IVT and exon arrays. Supports background correction (MAS5,RMA), normalization (linear scaling, quantile, sketch), and summarization (PLIER, RMA, MAS5) methods.
|
2024-12-10 |
|
ucsc-bedextendranges
|
public |
extend length of entries in bed 6+ data to be at least the given length,
|
2024-12-10 |
|
ucsc-bedtogenepred
|
public |
convert bed format files to genePred format
|
2024-12-10 |
|
ucsc-netsyntenic
|
public |
Add synteny info to net.
|
2024-12-10 |
|
perl-math-random
|
public |
Random Number Generators
|
2024-12-10 |
|
cmappy
|
public |
Assorted tools for interacting with .gct, .gctx, .grp, and .gmt files as well as other Connectivity Map (Broad Institute) data/tools
|
2024-12-10 |
|
biobb_io
|
public |
Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.
|
2024-12-10 |
|
glimmerhmm
|
public |
No Summary
|
2024-12-10 |
|
poa
|
public |
POA is Partial Order Alignment, a fast program for multiple sequence alignment in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment.
|
2024-12-10 |
|
blast-legacy
|
public |
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
|
2024-12-10 |
|
bwapy
|
public |
Bwapy provides python wrappers for bwa.
|
2024-12-10 |
|
pyprophet
|
public |
Python reimplementation of mProphet peak scoring
|
2024-12-10 |
|
consan
|
public |
Pairwise RNA structural alignment, both unconstrained and constrained on alignment pins.
|
2024-12-10 |
|
prank
|
public |
PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences.
|
2024-12-10 |
|
parasail-python
|
public |
Python bindings for the parasail C library containing implementations of pairwise sequence alignment algorithms.
|
2024-12-10 |
|
svdb
|
public |
structural variant database software
|
2024-12-10 |
|
pytriangle
|
public |
A python interface to the 2D triangulation program TRIANGLE
|
2024-12-10 |
|
mdust
|
public |
No Summary
|
2024-12-09 |
|
starfish
|
public |
Standardized analysis pipeline for image-based transcriptomics.
|
2024-12-09 |
|
nanocomp
|
public |
Comparing runs of Oxford Nanopore sequencing data and alignments
|
2024-12-09 |
|
cgat-apps
|
public |
Computational Genomics Analysis Toolkit.
|
2024-12-06 |
|
phylip
|
public |
Package of programs for inferring phylogenies
|
2024-12-06 |
|
tmalign
|
public |
TM-align sequence-order independent protein structure alignment
|
2024-12-06 |
