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ucsc-bigwigtowig
|
public |
Convert bigWig to wig. This will keep more of the same structure of the
|
2024-12-13 |
|
subread
|
public |
High-performance read alignment, quantification, and mutation discovery.
|
2024-12-13 |
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ucsc-bigwigcluster
|
public |
Cluster bigWigs using a hacTree
|
2024-12-13 |
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ucsc-bigwigaverageoverbed
|
public |
Compute average score of big wig over each bed, which may have introns.
|
2024-12-13 |
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age-metasv
|
public |
optimal alignment of sequences with structural variants (SVs), modifiied for MetaSV integration
|
2024-12-13 |
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raxml
|
public |
Phylogenetics - Randomized Axelerated Maximum Likelihood.
|
2024-12-13 |
|
ucsc-paranodestatus
|
public |
version 12.18
|
2024-12-13 |
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weeder
|
public |
No Summary
|
2024-12-13 |
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pullseq
|
public |
No Summary
|
2024-12-13 |
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ucsc-pslpartition
|
public |
split PSL files into non-overlapping sets
|
2024-12-13 |
|
snap-aligner
|
public |
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
|
2024-12-13 |
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perl-dbd-pg
|
public |
DBI PostgreSQL interface
|
2024-12-13 |
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bmfilter
|
public |
bmfilter is part of BMTagger aka Best Match Tagger, for removing human reads from metagenomics datasets
|
2024-12-13 |
|
ucsc-lavtoaxt
|
public |
Convert blastz lav file to an axt file (which includes sequence)
|
2024-12-13 |
|
bedtools
|
public |
A powerful toolset for genome arithmetic
|
2024-12-13 |
|
ucsc-ixixx
|
public |
Create indices for simple line-oriented file of format
|
2024-12-13 |
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perl-io-compress
|
public |
IO Interface to compressed data files/buffers
|
2024-12-13 |
|
ucsc-newpythonprog
|
public |
Make a skeleton for a new python program
|
2024-12-13 |
|
flexbar
|
public |
Flexible barcode and adapter removal
|
2024-12-13 |
|
ucsc-maftopsl
|
public |
Convert maf to psl format
|
2024-12-13 |
|
quicksect
|
public |
A cythonized, extended version of the interval search tree in bx
|
2024-12-13 |
|
ucsc-bedrestricttopositions
|
public |
Filter bed file, restricting to only ones that match chrom/start/ends specified in restrict.bed file.
|
2024-12-13 |
|
centrifuge
|
public |
Classifier for metagenomic sequences. Supports classifier scripts
|
2024-12-13 |
|
pbgzip
|
public |
Parallel Block GZIP
|
2024-12-13 |
|
r-scimpute
|
public |
scImpute is accurate and robust imputation of single-cell RNA sequencing data.
|
2024-12-13 |
|
ucsc-qatoqac
|
public |
convert from uncompressed to compressed
|
2024-12-13 |
|
ucsc-genepredfilter
|
public |
filter a genePred file
|
2024-12-13 |
|
dnp-diprofile
|
public |
Dinucleotide frequency of occurrence in a batch of fasta sequences
|
2024-12-13 |
|
bfc
|
public |
BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data.
|
2024-12-13 |
|
ucsc-hggcpercent
|
public |
Calculate GC Percentage in 20kb windows
|
2024-12-13 |
|
ucsc-parafetch
|
public |
try to fetch url with multiple connections
|
2024-12-13 |
|
ucsc-gmtime
|
public |
convert unix timestamp to date string
|
2024-12-13 |
|
ucsc-subcolumn
|
public |
Substitute one column in a tab-separated file.
|
2024-12-13 |
|
ucsc-farandomize
|
public |
Program to create random fasta records
|
2024-12-13 |
|
ucsc-pslpretty
|
public |
Convert PSL to human-readable output
|
2024-12-13 |
|
perl-crypt-openssl-random
|
public |
No Summary
|
2024-12-13 |
|
razers3
|
public |
RazerS 3 - Faster, fully sensitive read mapping
|
2024-12-13 |
|
bamtools
|
public |
C++ API & command-line toolkit for working with BAM data
|
2024-12-13 |
|
ucsc-bedtopsl
|
public |
convert bed format files to psl format
|
2024-12-13 |
|
ucsc-subchar
|
public |
Substitute one character for another throughout a file.
|
2024-12-13 |
|
mcl
|
public |
MCL - a cluster algorithm for graphs
|
2024-12-13 |
|
eigensoft
|
public |
The EIGENSOFT package implements methods for analzing population structure and performing stratification correction
|
2024-12-13 |
|
simlord
|
public |
SimLoRD is a read simulator for long reads from third generation sequencing. Currently, it supports the Pacific Biosciences SMRT error model.
|
2024-12-12 |
|
bayescan
|
public |
Phylogenetics - Randomized Axelerated Maximum Likelihood.
|
2024-12-12 |
|
cd-hit-auxtools
|
public |
Clusters and compares protein or nucleotide sequences
|
2024-12-12 |
|
fastq-tools
|
public |
A collection of fastq manipulation scripts written in C for speed.
|
2024-12-12 |
|
perl-perlio-gzip
|
public |
PerlIO interface to gzip/gunzip
|
2024-12-12 |
|
genepop
|
public |
Population Genetic Data Analysis package.
|
2024-12-12 |
|
ucsc-fasomerecords
|
public |
Extract multiple fa records
|
2024-12-12 |
|
zagros
|
public |
No Summary
|
2024-12-12 |
