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bioconductor-browserviz
|
public |
BrowserViz: interactive R/browser graphics using websockets and JSON
|
2024-12-16 |
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perl-file-copy-recursive
|
public |
Perl extension for recursively copying files and directories
|
2024-12-16 |
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bioconductor-methylmnm
|
public |
detect different methylation level (DMR)
|
2024-12-16 |
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bioconductor-gcatest
|
public |
Genotype Conditional Association TEST
|
2024-12-16 |
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angsd
|
public |
ANGSD: Analysis of next generation Sequencing Data
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2024-12-16 |
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metasnv
|
public |
SNV calling software
|
2024-12-16 |
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ucsc-bedtobigbed
|
public |
Convert bed file to bigBed. (BigBed version: 4)
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2024-12-16 |
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bioconductor-affyio
|
public |
Tools for parsing Affymetrix data files
|
2024-12-16 |
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perl-json-xs
|
public |
JSON serialising/deserialising, done correctly and fast
|
2024-12-16 |
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bioconductor-rsubread
|
public |
Mapping, quantification and variant analysis of sequencing data
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2024-12-16 |
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genomedata
|
public |
Tools for accessing large amounts of genomic data
|
2024-12-15 |
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metilene
|
public |
Fast and sensitive detection of differential DNA methylation
|
2024-12-15 |
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quast
|
public |
Quality Assessment Tool for Genome Assemblies
|
2024-12-15 |
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ribotaper
|
public |
RiboTaper is a new analysis pipeline for Ribosome Profiling (Ribo-seq) experiments, which exploits the triplet periodicity of ribosomal footprints to call translated regions.
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2024-12-15 |
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dunovo
|
public |
Du Novo: A pipeline for processing duplex sequencing data.
|
2024-12-15 |
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batvi
|
public |
Detect viral integrations
|
2024-12-15 |
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bioconductor-ndexr
|
public |
NDEx R client library
|
2024-12-15 |
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bioconductor-dupradar
|
public |
Assessment of duplication rates in RNA-Seq datasets
|
2024-12-15 |
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rascaf
|
public |
No Summary
|
2024-12-15 |
|
demuxlet
|
public |
Genetic multiplexing of barcoded single cell RNA-seq
|
2024-12-15 |
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soapdenovo-trans
|
public |
No Summary
|
2024-12-15 |
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perl-set-intervaltree
|
public |
An interval tree implementation in PERL.
|
2024-12-15 |
|
perl-template-toolkit
|
public |
comprehensive template processing system
|
2024-12-15 |
|
bioconductor-philr
|
public |
Phylogenetic partitioning based ILR transform for metagenomics data
|
2024-12-15 |
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bioconductor-clstutils
|
public |
Tools for performing taxonomic assignment
|
2024-12-15 |
|
bcftools
|
public |
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations.
|
2024-12-15 |
|
segemehl
|
public |
Short read mapping with gaps
|
2024-12-15 |
|
breseq
|
public |
A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data.
|
2024-12-15 |
|
novobreak
|
public |
local assembly for breakpoint detection in cancer genomes
|
2024-12-15 |
|
nanopolish
|
public |
Signal-level algorithms for MinION data.
|
2024-12-15 |
|
gap2seq
|
public |
Gap2Seq is a tool for filling gaps between contigs in genome assemblies.
|
2024-12-15 |
|
maxbin2
|
public |
MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm.
|
2024-12-15 |
|
intarna
|
public |
Efficient RNA-RNA interaction prediction incorporating seeding and accessibility of interacting sites
|
2024-12-15 |
|
unicycler
|
public |
Hybrid assembly pipeline for bacterial genomes
|
2024-12-15 |
|
bpp-seq
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2024-12-15 |
|
perl-html-parser
|
public |
HTML parser class
|
2024-12-15 |
|
metabat2
|
public |
Metagenome binning
|
2024-12-15 |
|
perl-dbd-mysql
|
public |
A MySQL driver for the Perl5 Database Interface (DBI)
|
2024-12-15 |
|
perl-class-xsaccessor
|
public |
Generate fast XS accessors without runtime compilation
|
2024-12-15 |
|
fqtools
|
public |
An efficient FASTQ manipulation suite.
|
2024-12-15 |
|
nim-falcon
|
public |
Nim-based executables used by Falcon assembly workflow
|
2024-12-15 |
|
verifybamid2
|
public |
A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
|
2024-12-15 |
|
perl-pod-elemental
|
public |
work with nestable Pod elements
|
2024-12-15 |
|
bioconductor-arrayquality
|
public |
Assessing array quality on spotted arrays
|
2024-12-15 |
|
snp-pileup
|
public |
Compute SNP pileup at reference positions in one or more input bam files. Output is ready for the R package facets
|
2024-12-15 |
|
bioconductor-nnnorm
|
public |
Spatial and intensity based normalization of cDNA microarray data based on robust neural nets
|
2024-12-15 |
|
bioconductor-olin
|
public |
Optimized local intensity-dependent normalisation of two-color microarrays
|
2024-12-15 |
|
bioconductor-stepnorm
|
public |
Stepwise normalization functions for cDNA microarrays
|
2024-12-15 |
|
bioconductor-rbm
|
public |
RBM: a R package for microarray and RNA-Seq data analysis
|
2024-12-15 |
|
tracy
|
public |
Basecalling, alignment, assembly and deconvolution of Sanger chromatogram trace files
|
2024-12-15 |
