| Package Name | Access | Summary | Updated |
|---|---|---|---|
| ucsc-qacagplift | public | Use AGP to combine per-scaffold qac into per-chrom qac. | 2025-06-30 |
| ucsc-countchars | public | Count the number of occurrences of a particular char. | 2025-06-30 |
| ucsc-netsyntenic | public | Add synteny info to net. | 2025-06-30 |
| ucsc-maftoaxt | public | Convert from maf to axt format. | 2025-06-30 |
| ucsc-blasttopsl | public | Convert blast alignments to PSLs. | 2025-06-30 |
| ucsc-bigwigcluster | public | Cluster bigWigs using a hacTree. | 2025-06-30 |
| ucsc-genepredhisto | public | Get data for generating histograms from a genePred file. | 2025-06-30 |
| ucsc-maforder | public | Order components within a maf file. | 2025-06-30 |
| ucsc-farc | public | Reverse complement a FA file. | 2025-06-30 |
| ucsc-rowstocols | public | Convert rows to columns and vice versa in a text file. | 2025-06-29 |
| ucsc-localtime | public | Convert unix timestamp to date string. | 2025-06-29 |
| ucsc-ratolines | public | Output .ra file stanzas as single lines, with pipe-separated fields. | 2025-06-29 |
| ucsc-lavtopsl | public | Convert blastz lav to psl format. | 2025-06-29 |
| ucsc-dbsnoop | public | Produce an overview of a database. | 2025-06-29 |
| ucsc-maftosnpbed | public | Finds SNPs in MAF and builds a bed with their functional consequence. | 2025-06-29 |
| ucsc-ratotab | public | Convert ra file to table. | 2025-06-29 |
| ucsc-nettoaxt | public | Convert net (and chain) to axt. | 2025-06-29 |
| ucsc-facmp | public | Compare two .fa files. | 2025-06-29 |
| ucsc-tdbquery | public | Query the trackDb system using SQL syntax. | 2025-06-29 |
| ucsc-maffrags | public | Collect MAFs from regions specified in a 6 column bed file. | 2025-06-29 |
| ucsc-nibsize | public | Print size of nibs. | 2025-06-29 |
| ucsc-farandomize | public | Program to create random fasta records. | 2025-06-29 |
| ucsc-maftopsl | public | Convert maf to psl format. | 2025-06-29 |
| ucsc-mafmefirst | public | Move component to top if it is one of the named ones. | 2025-06-29 |
| ucsc-qatoqac | public | Convert from uncompressed to compressed. | 2025-06-29 |
