|
bpp-phyl
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2024-12-16 |
|
cutadapt
|
public |
Trim adapters from high-throughput sequencing reads
|
2024-12-16 |
|
bioconductor-interactivedisplaybase
|
public |
Base package for enabling powerful shiny web displays of Bioconductor objects
|
2024-12-16 |
|
bpp-popgen
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2024-12-16 |
|
perl-sanger-cgp-vagrent
|
public |
A toolset for comparing genomic variants to reference genome annotation to identify potential biological consequences.
|
2024-12-16 |
|
gmap
|
public |
Genomic mapping and alignment program for mRNA and EST sequences.
|
2024-12-16 |
|
biobambam
|
public |
Tools for early stage alignment file processing.
|
2024-12-16 |
|
bioconductor-rpx
|
public |
R Interface to the ProteomeXchange Repository
|
2024-12-16 |
|
dbg2olc
|
public |
Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies
|
2024-12-16 |
|
snvphyl-tools
|
public |
The SNVPhyl (Single Nucleotide Variant PHYLogenomics) pipeline is a pipeline for identifying
Single Nucleotide Variants (SNV) within a collection of microbial genomes and constructing a phylogenetic tree
|
2024-12-16 |
|
addrg
|
public |
No Summary
|
2024-12-16 |
|
discosnp
|
public |
reference-free small variant caller for short read sequencing data
|
2024-12-16 |
|
bioconductor-browserviz
|
public |
BrowserViz: interactive R/browser graphics using websockets and JSON
|
2024-12-16 |
|
perl-file-copy-recursive
|
public |
Perl extension for recursively copying files and directories
|
2024-12-16 |
|
bioconductor-methylmnm
|
public |
detect different methylation level (DMR)
|
2024-12-16 |
|
bioconductor-gcatest
|
public |
Genotype Conditional Association TEST
|
2024-12-16 |
|
angsd
|
public |
ANGSD: Analysis of next generation Sequencing Data
|
2024-12-16 |
|
metasnv
|
public |
SNV calling software
|
2024-12-16 |
|
ucsc-bedtobigbed
|
public |
Convert bed file to bigBed. (BigBed version: 4)
|
2024-12-16 |
|
bioconductor-affyio
|
public |
Tools for parsing Affymetrix data files
|
2024-12-16 |
|
perl-json-xs
|
public |
JSON serialising/deserialising, done correctly and fast
|
2024-12-16 |
|
bioconductor-rsubread
|
public |
Mapping, quantification and variant analysis of sequencing data
|
2024-12-16 |
|
genomedata
|
public |
Tools for accessing large amounts of genomic data
|
2024-12-15 |
|
metilene
|
public |
Fast and sensitive detection of differential DNA methylation
|
2024-12-15 |
|
quast
|
public |
Quality Assessment Tool for Genome Assemblies
|
2024-12-15 |
|
ribotaper
|
public |
RiboTaper is a new analysis pipeline for Ribosome Profiling (Ribo-seq) experiments, which exploits the triplet periodicity of ribosomal footprints to call translated regions.
|
2024-12-15 |
|
dunovo
|
public |
Du Novo: A pipeline for processing duplex sequencing data.
|
2024-12-15 |
|
batvi
|
public |
Detect viral integrations
|
2024-12-15 |
|
bioconductor-ndexr
|
public |
NDEx R client library
|
2024-12-15 |
|
bioconductor-dupradar
|
public |
Assessment of duplication rates in RNA-Seq datasets
|
2024-12-15 |
|
rascaf
|
public |
No Summary
|
2024-12-15 |
|
demuxlet
|
public |
Genetic multiplexing of barcoded single cell RNA-seq
|
2024-12-15 |
|
soapdenovo-trans
|
public |
No Summary
|
2024-12-15 |
|
perl-set-intervaltree
|
public |
An interval tree implementation in PERL.
|
2024-12-15 |
|
perl-template-toolkit
|
public |
comprehensive template processing system
|
2024-12-15 |
|
bioconductor-philr
|
public |
Phylogenetic partitioning based ILR transform for metagenomics data
|
2024-12-15 |
|
bioconductor-clstutils
|
public |
Tools for performing taxonomic assignment
|
2024-12-15 |
|
bcftools
|
public |
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations.
|
2024-12-15 |
|
segemehl
|
public |
Short read mapping with gaps
|
2024-12-15 |
|
breseq
|
public |
A computational pipeline for finding mutations relative to a reference sequence in short-read DNA re-sequencing data.
|
2024-12-15 |
|
novobreak
|
public |
local assembly for breakpoint detection in cancer genomes
|
2024-12-15 |
|
nanopolish
|
public |
Signal-level algorithms for MinION data.
|
2024-12-15 |
|
gap2seq
|
public |
Gap2Seq is a tool for filling gaps between contigs in genome assemblies.
|
2024-12-15 |
|
maxbin2
|
public |
MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm.
|
2024-12-15 |
|
intarna
|
public |
Efficient RNA-RNA interaction prediction incorporating seeding and accessibility of interacting sites
|
2024-12-15 |
|
unicycler
|
public |
Hybrid assembly pipeline for bacterial genomes
|
2024-12-15 |
|
bpp-seq
|
public |
Bio++ is a set of C++ libraries for Bioinformatics.
|
2024-12-15 |
|
perl-html-parser
|
public |
HTML parser class
|
2024-12-15 |
|
metabat2
|
public |
Metagenome binning
|
2024-12-15 |
|
perl-dbd-mysql
|
public |
A MySQL driver for the Perl5 Database Interface (DBI)
|
2024-12-15 |
