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bioconda / packages

Package Name Access Summary Updated
ngmlr public ngmlr is a long-read mapper designed to align PacBio or Oxford Nanopore reads to a reference genome and optimized for structural variation detection 2025-07-08
sniffles public Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore). 2025-07-08
nf-core public Python package with helper tools for the nf-core community. 2025-07-08
snap public Semi-HMM-based Nucleic Acid Parser - a gene prediction tool. 2025-07-08
fqtools public An efficient FASTQ manipulation suite. 2025-07-08
exonerate public Exonerate - A generic tool for pairwise sequence comparison / alignment 2025-07-08
fwdpp public A C++ template library for forward-time population genetic simulation. 2025-07-08
saffrontree public No Summary 2025-07-07
chromhmm public ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. 2025-07-07
perl-cgi public A generic file fetching mechanism. 2025-07-07
ls-gkm public gkm-SVM, a sequence-based method for predicting regulatory DNA elements. 2025-07-03
repeatmodeler public RepeatModeler is a de-novo repeat family identification and modeling package. 2025-07-03
domclust public Effective tool for orthologous grouping in multiple genomes 2025-07-03
beast public BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC. 2025-07-03
primer3-py public Python bindings for Primer3 2025-07-02
r-lme4qtl public Linear mixed models (lme4) with flexible covariance structure for qtl and association analysis. 2025-07-02
ucsc-overlapselect public Select records based on overlapping chromosome ranges. 2025-07-02
faststructure public A variational framework for inferring population structure from SNP genotype data. 2025-07-01
r-exomedepth public Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders. 2025-06-30
ucsc-facount public Count base statistics and CpGs in FA files. 2025-06-30
ucsc-headrest public Return all *but* the first N lines of a file. 2025-06-30
ucsc-mafcoverage public Analyse coverage by maf files - chromosome by. 2025-06-30
ucsc-ldhggene public Load database with gene predictions from a gff file. 2025-06-30
ucsc-splitfile public Split up a file. 2025-06-30
ucsc-hubcheck public Check a track data hub for integrity. 2025-06-30

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