| Package Name | Access | Summary | Updated |
|---|---|---|---|
| maxentpy | public | maxentpy is a python wrapper for MaxEntScan to calculate splice site strength. | 2025-07-16 |
| mapdamage2 | public | mapDamage: tracking and quantifying damage patterns in ancient DNA sequencing reads generated by Next-Generation Sequencing platforms. | 2025-07-16 |
| kleborate | public | Kleborate: a tool for typing and screening pathogen genome assemblies. | 2025-07-15 |
| hgtools | public | Classes for Mercurial and Git repositories. | 2025-07-15 |
| gffcompare | public | GffCompare by Geo Pertea. | 2025-07-15 |
| perl-inline | public | Write Perl Subroutines in Other Programming Languages. | 2025-07-15 |
| synapseclient | public | Python client for Synapse. | 2025-07-15 |
| r-rblast | public | Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute. | 2025-07-15 |
| ucsc-hgloadbed | public | Load a generic bed file into database. | 2025-07-15 |
| ucsc-hgspeciesrna | public | Create fasta file with RNA from one species. | 2025-07-15 |
| htslib | public | C library for high-throughput sequencing data formats. | 2025-07-14 |
| ucsc-paranodestatus | public | Check status of paraNode on a list of machines. | 2025-07-14 |
| ucsc-parahubstop | public | Shut down paraHub daemon. | 2025-07-14 |
| ucsc-paranode | public | Parasol node server. | 2025-07-14 |
| ucsc-paranodestop | public | Shut down parasol node daemons on a list of machines. | 2025-07-14 |
| ucsc-paranodestart | public | Start up parasol node daemons on a list of machines. | 2025-07-14 |
| ucsc-parasol | public | Parallel job management system for a compute cluster. | 2025-07-14 |
| ropebwt2 | public | Incremental construction of FM-index for DNA sequences | 2025-07-10 |
| gotree | public | gotree is a set of command line tools to manipulate phylogenetic trees. | 2025-07-09 |
| seqtk | public | Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format | 2025-07-09 |
| perl-io-zlib | public | IO:: style interface to Compress::Zlib | 2025-07-09 |
| iqtree | public | Efficient phylogenomic software by maximum likelihood. | 2025-07-09 |
| admixtools | public | ADMIXTOOLS (Patterson et al. 2012) is a software package that supports formal tests of whether admixture occurred, and makes it possible to infer admixture proportions and dates. | 2025-07-09 |
| ngmlr | public | ngmlr is a long-read mapper designed to align PacBio or Oxford Nanopore reads to a reference genome and optimized for structural variation detection | 2025-07-08 |
| sniffles | public | Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore). | 2025-07-08 |
