| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-cager | public | Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining | 2025-04-22 |
| bioconductor-gsva | public | Gene Set Variation Analysis for Microarray and RNA-Seq Data | 2025-04-22 |
| lsc | public | No Summary | 2025-04-22 |
| parallel-fastq-dump | public | parallel fastq-dump wrapper | 2025-04-22 |
| bam-readcount | public | bam-readcount generates metrics at single nucleotide positions. | 2025-04-22 |
| r-nhmmfdr | public | No Summary | 2025-04-22 |
| r-locfdr | public | No Summary | 2025-04-22 |
| r-factominer | public | Exploratory data analysis methods to summarize, visualize and describe datasets. The main principal component methods are available, those with the largest potential in terms of applications: principal component analysis (PCA) when variables are quantitative, correspondence analysis (CA) and multiple correspondence analysis (MCA) when variables are categorical, Multiple Factor Analysis when variables are structured in groups, etc. and hierarchical cluster analysis. | 2025-04-22 |
| r-biganalytics | public | No Summary | 2025-04-22 |
| hmmer2 | public | No Summary | 2025-04-22 |
| bioconductor-doppelgangr | public | Identify likely duplicate samples from genomic or meta-data | 2025-04-22 |
| secapr | public | Process sequence-capture FASTQ files into alignments for phylogenetic analyses. Integrates allele phasing. | 2025-04-22 |
| udocker | public | Freely available tools for computational molecular biology. | 2025-04-22 |
| proot | public | No Summary | 2025-04-22 |
| talloc | public | No Summary | 2025-04-22 |
| bioconductor-genomeinfodbdata | public | Species and taxonomy ID look up tables used by GenomeInfoDb | 2025-04-22 |
| bucketcache | public | No Summary | 2025-04-22 |
| represent | public | No Summary | 2025-04-22 |
| norns | public | Simple yaml-based config module | 2025-04-22 |
| perl-data-dumper | public | seeds germane, yet not germinated | 2025-04-22 |
| np-likeness-scorer | public | No Summary | 2025-04-22 |
| perl-yaml-tiny | public | Read/Write YAML files with as little code as possible | 2025-04-22 |
| plasmidtron | public | PlasmidTron: assembling the cause of phenotypes from NGS data | 2025-04-22 |
| pairix | public | 2D indexing on bgzipped text files of paired genomic coordinates | 2025-04-22 |
| weeder | public | No Summary | 2025-04-22 |
