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xcftools
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public |
Provides xcf2pnm, xcf2png, and xcfinfo binaries
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2025-04-22 |
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arem
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public |
Aligning Reads by Expectation-Maximization.\nBased on MACS (Model Based Analysis for ChIP-Seq data)
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2025-04-22 |
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bioconductor-affydata
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public |
Affymetrix Data for Demonstration Purpose
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2025-04-22 |
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r-r2html
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public |
Includes HTML function and methods to write in an HTML file. Thus, making HTML reports is easy. Includes a function that allows redirection on the fly, which appears to be very useful for teaching purpose, as the student can keep a copy of the produced output to keep all that he did during the course. Package comes with a vignette describing how to write HTML reports for statistical analysis. Finally, a driver for 'Sweave' allows to parse HTML flat files containing R code and to automatically write the corresponding outputs (tables and graphs).
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2025-04-22 |
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r-rentrez
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public |
Provides an R interface to the NCBI's EUtils API allowing users to search databases
like GenBank and PubMed, process the results of those searches and pull data into
their R sessions.
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2025-04-22 |
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bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19
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public |
Annotation for Illumina's 450k methylation arrays
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2025-04-22 |
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outrigger
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public |
Outrigger detects *de novo* exons and quantifies their percent spliced-in
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2025-04-22 |
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perl-test-trap
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public |
Trap exit codes, exceptions, output, etc.
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2025-04-22 |
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perl-data-dump
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public |
Pretty printing of data structures
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2025-04-22 |
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tadarida-c
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public |
Tadarida-C (Toolbox for Animal Detection on Acoustic Recordings - Classification part) for Galaxy use.
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2025-04-22 |
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scg
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public |
The single cell genotyper (SCG): "Roth A, McPherson A, Laks E, Biele J, Yap D, Wan A, et al. Clonal genotype and population structure inference from single-cell tumor sequencing. Nat Meth. 2016;13: 573–576. doi:10.1038/nmeth.3867"
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2025-04-22 |
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taxmapper
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public |
Analysis pipeline for metagenomic, microeukaryotic sequencing data.
|
2025-04-22 |
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csb
|
public |
Computational Structural Biology Toolbox
|
2025-04-22 |
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bioconductor-methylseekr
|
public |
Segmentation of Bis-seq data
|
2025-04-22 |
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r-micropan
|
public |
A collection of functions for computations and visualizations of microbial pan-genomes.
|
2025-04-22 |
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embassy-phylip
|
public |
embassy/emboss wrappers for phylip functions
|
2025-04-22 |
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trawler
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public |
Trawler is a motif discovery tool used to identify enriched motifs in a set of sequenced regions of DNA.
|
2025-04-22 |
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gadem
|
public |
A Genetic Algorithm Guided Formation of Spaced Dyads Coupled with an EM Algorithm for Motif Discovery
|
2025-04-22 |
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bioconductor-exomecopy
|
public |
Copy number variant detection from exome sequencing read depth
|
2025-04-22 |
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bioconductor-degseq
|
public |
Identify Differentially Expressed Genes from RNA-seq data
|
2025-04-22 |
|
bioconductor-globalseq
|
public |
Global Test for Counts
|
2025-04-22 |
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genonets
|
public |
Framework for creating and analyzing genotype networks from data.
|
2025-04-22 |
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bioconductor-chronos
|
public |
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
|
2025-04-22 |
|
bioconductor-cqn
|
public |
Conditional quantile normalization
|
2025-04-22 |
|
r-openxlsx
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public |
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, styling and editing worksheets. Through the use of 'Rcpp', read/write times are comparable to the 'xlsx' and 'XLConnect' packages with the added benefit of removing the dependency on Java.
|
2025-04-22 |
