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bioconductor-biocgenerics
|
public |
S4 generic functions used in Bioconductor
|
2023-12-04 |
|
gunc
|
public |
Python package for detection of chimerism and contamination in prokaryotic genomes.
|
2023-11-24 |
|
rmblast
|
public |
RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST+ suite.
|
2023-10-10 |
|
ngscheckmate
|
public |
Software package for identifying next generation sequencing (NGS) data files from the same individual.
|
2023-09-04 |
|
r-sceasy
|
public |
A package providing functions to convert between different single-cell data formats.
|
2023-07-19 |
|
flair
|
public |
Correction, isoform definition, and alternative splicing analysis of noisy reads (ONT and PacBio).
|
2023-07-16 |
|
dipcall
|
public |
Dipcall is a reference-based variant calling pipeline for a pair of phased haplotype assemblies.
|
2023-06-16 |
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nanocompore
|
public |
Nanocompore identifies raw signal changes between two conditions dRNA-Seq data.
|
2023-06-16 |
|
openduck
|
public |
Open source library for dynamic undocking (DUck)
|
2023-06-16 |
|
grid
|
public |
Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).
|
2023-06-16 |
|
libarbdb
|
public |
ARB 6 Sequence Analysis Suite
|
2023-06-16 |
|
arb-bio-tools
|
public |
ARB 6 Sequence Analysis Suite
|
2023-06-16 |
|
arb-bio-devel
|
public |
ARB 6 Sequence Analysis Suite
|
2023-06-16 |
|
perl-math-random-mt-auto
|
public |
Auto-seeded Mersenne Twister PRNGs
|
2023-06-16 |
|
perl-package-stash-xs
|
public |
faster and more correct implementation of the Package::Stash API
|
2023-06-16 |
|
perl-storable
|
public |
persistence for Perl data structures
|
2023-06-16 |
|
logol
|
public |
Logol is a pattern matching grammar language and a set of tools to search a pattern in a sequence (nucleic or proteic)
|
2023-06-16 |
|
r-biclust
|
public |
The main function biclust provides several algorithms to find biclusters in two-dimensional data: Cheng and Church, Spectral, Plaid Model, Xmotifs and Bimax. In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.
|
2023-06-16 |
|
perl-mime-base64
|
public |
The RFC 2045 encodings; base64 and quoted-printable
|
2023-06-16 |
|
genomicconsensus
|
public |
No Summary
|
2023-06-16 |
|
perl-class-load-xs
|
public |
XS implementation of parts of Class::Load
|
2023-06-16 |
|
perl-perlio-utf8_strict
|
public |
Fast and correct UTF-8 IO
|
2023-06-16 |
|
blasr
|
public |
No Summary
|
2023-06-16 |
|
mentalist
|
public |
The MLST pipeline developed by the PathOGiST research group.
|
2023-06-16 |
|
r-ggthemes
|
public |
Some extra themes, geoms, and scales for ggplot2. Provides ggplot2 themes and scales that replicate the look of plots by Edward Tufte, Stephen Few, Fivethirtyeight, The Economist, Stata, Excel, and The Wall Street Journal, among others. Provides geoms for Tufte s box plot and range frame.
|
2023-06-16 |
|
pizzly
|
public |
Fast fusion detection using kallisto
|
2023-06-16 |
|
arb-bio
|
public |
ARB 6 Sequence Analysis Suite
|
2023-06-16 |
|
perl-datetime
|
public |
A date and time object for Perl
|
2023-06-16 |
|
perl-variable-magic
|
public |
Associate user-defined magic to variables from Perl.
|
2023-06-16 |
|
perl-sub-attribute
|
public |
Reliable subroutine attribute handlers
|
2023-06-16 |
|
fastaindex
|
public |
No Summary
|
2023-06-16 |
|
nspdk
|
public |
No Summary
|
2023-06-16 |
|
sed
|
public |
sed (stream editor)
|
2023-06-16 |
|
perl-html-parser
|
public |
HTML parser class
|
2023-06-16 |
|
r-fdrtool
|
public |
Estimates both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non-parametric density estimation (Grenander estimator), for monotone regression (isotonic regression and antitonic regression with weights), for computing the greatest convex minorant (GCM) and the least concave majorant (LCM), for the half-normal and correlation distributions, and for computing empirical higher criticism (HC) scores and the corresponding decision threshold.
|
2023-06-16 |
|
perl-module-build-tiny
|
public |
A tiny replacement for Module::Build
|
2023-06-16 |
|
circos
|
public |
Circos is a software package for visualizing data and information. It visualizes data in a circular layout
|
2023-06-16 |
|
perl-params-validate
|
public |
Validate method/function parameters
|
2023-06-16 |
|
perl-text-soundex
|
public |
Implementation of the soundex algorithm.
|
2023-06-16 |
|
gawk
|
public |
GNU awk
|
2023-06-16 |
|
poretools
|
public |
poretools: a toolkit for working with nanopore sequencing data from Oxford Nanopore
|
2023-06-16 |
|
libmagic
|
public |
Implementation of the file(1) command
|
2023-06-16 |
|
ruamel.yaml
|
public |
A YAML package for Python. It is a derivative of Kirill Simonov's PyYAML 3.11 which supports YAML1.1
|
2023-06-16 |
|
fastqc
|
public |
A quality control tool for high throughput sequence data.
|
2023-06-16 |
|
perl-gd
|
public |
Perl interface to the gd2 graphics library
|
2023-06-16 |
|
trimmomatic
|
public |
A flexible read trimming tool for Illumina NGS data
|
2023-06-16 |
|
perl-encode-locale
|
public |
Determine the locale encoding
|
2023-06-16 |
|
setuptools_cython
|
public |
Cython setuptools integration
|
2023-06-16 |
|
tabulate
|
public |
Pretty-print tabular data
|
2023-06-16 |
