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deepchopper
|
public |
A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing.
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2025-04-22 |
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mutyper
|
public |
A Python package and command line utility for annotating the local ancestral sequence context of biallelic SNPs.
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2025-04-22 |
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mikrokondo-tools
|
public |
A collection of utilities to make using the mikrokondo pipeline easier
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2025-04-22 |
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r-saccharis
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public |
A rendering package for creating phylogenetic trees from SACCHARIS .json and .tree files, in the R statistical computing language.
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2025-04-22 |
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zamp
|
public |
zAMP: bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
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2025-04-22 |
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genodsp
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public |
General workbench for processing signals along genomic (chromosomal) intervals
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2025-04-22 |
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telosearchlr
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public |
TeloSearchLR (telomere search using long sequencing reads) is a Python script for aiding the identificaiton of telomeric repeat motifs.
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2025-04-22 |
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snipe
|
public |
SRA-Scale sequence QC and analysis
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2025-04-22 |
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splash
|
public |
Unsupervised and reference-free unifying framework to discover regulated sequence variation through statistical analysis of k-mer composition in both DNA and RNA sequence.
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2025-04-22 |
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gene-trajectory-python
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public |
Compute gene trajectories
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2025-04-22 |
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cloudspades
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public |
A module of the SPAdes assembler aimed at genome assembly from linked read technologies (10x, Tellseq, Haplotagging).
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2025-04-22 |
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fmsi
|
public |
FMSI - memory efficient k-mer set index based on masked superstrings and Burrows-Wheeler transform.
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2025-04-22 |
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longcallr_nn
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public |
longcallR_nn is a variant caller specifically designed for long-read RNA-seq data utilizing a ResNet model.
|
2025-04-22 |
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meta_eukaryome_detect
|
public |
Pathogen, Parasite, Eukaryote and Virus detection in metagenomes.
|
2025-04-22 |
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devider
|
public |
Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn graphs.
|
2025-04-22 |
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sfold
|
public |
Software for Statistical Folding of Nucleic Acids
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2025-04-22 |
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gfainject
|
public |
Inject alignment into pangenome graphs
|
2025-04-22 |
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lz-ani
|
public |
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes
|
2025-04-22 |
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patchify
|
public |
A library that helps you split image into small, overlappable patches, and merge patches back into the original image.
|
2025-04-22 |
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tefinder
|
public |
Programs for transposable element search and annotation in large eukaryotic genome sequence.
|
2025-04-22 |
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snk
|
public |
A Snakemake CLI and Workflow Management System.
|
2025-04-22 |
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snk-cli
|
public |
Dynamically generate CLIs from Snakemake configuration files
|
2025-04-22 |
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mini3di
|
public |
A NumPy port of the foldseek code for encoding protein structures to 3di.
|
2025-04-22 |
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get_mnv
|
public |
Tool to identify Multi-Nucleotide Variants (MNVs) in genomic sequences.
|
2025-04-22 |
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hmftools-peach
|
public |
Infer haplotypes for interpretation in a pharmacogenomic context
|
2025-04-22 |
