| Package Name | Access | Summary | Updated |
|---|---|---|---|
| rbpbench | public | Evaluate CLIP-seq and other genomic region data using a comprehensive collection of known RBP binding motifs | 2025-05-21 |
| hmftools-cider | public | Determine a comprehensive list of CDR3 sequences for each of the IG and TCR loci from RNA and DNA sequence data. | 2025-05-21 |
| unicore | public | Universal and efficient core gene phylogeny with Foldseek and ProstT5 | 2025-05-20 |
| longbow | public | A Python program for nanopore sequencing basecalling configuration prediction | 2025-05-20 |
| meme | public | Motif-based sequence analysis tools. | 2025-05-20 |
| ena-upload-cli | public | Command Line Interface to upload data to the European Nucleotide Archive | 2025-05-19 |
| vcflib | public | Command-line tools for manipulating VCF files. | 2025-05-19 |
| sideretro | public | A pipeline for detecting Somatic Insertion of DE novo RETROcopies | 2025-05-19 |
| bamtools | public | C++ API & command-line toolkit for working with BAM data. | 2025-05-18 |
| tissuumaps | public | TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene expression data or any kind of point data on top of whole slide images | 2025-05-18 |
| soi | public | Orthology Index (OrthoIndex or OI) determines the orthology of a syntenic block. | 2025-05-18 |
| vvv2_display | public | Creates png image file with all [vardict] variants proportions alongside genome/assembly with annotations from [vadr]. | 2025-05-17 |
| sipros | public | Tools for stable isotopic mass spectrometry-based metaproteomics | 2025-05-17 |
| libcarna-python | public | Real-time 3D visualization of biomedical data and beyond in Python | 2025-05-17 |
| lollipop | public | A tool for Deconvolution for Wastewater Genomics | 2025-05-16 |
| strobealign | public | Align short reads using dynamic seed size with strobemers | 2025-05-16 |
| juicebox_scripts | public | A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats | 2025-05-16 |
| omark | public | OMArk - Proteome quality assesment based on OMAmer placements | 2025-05-16 |
| omamer | public | OMAmer - tree-driven and alignment-free protein assignment to sub-families | 2025-05-16 |
| multiz | public | DNA multiple sequence aligner from Penn State's Miller lab. | 2025-05-16 |
| snakemake-storage-plugin-fs | public | A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync. | 2025-05-15 |
| perl-vcftools-vcf | public | cpanm ready distribution of VCFtools Perl libraries | 2025-05-15 |
| vcftools | public | A set of tools written in Perl and C++ for working with VCF files. | 2025-05-15 |
| spades | public | SPAdes (St. Petersburg genome assembler) is intended for both standard isolates and single-cell MDA bacteria assemblies. | 2025-05-14 |
| tajimas_d | public | Computes Tajimas D, the Pi- or Watterson-Estimator for multiple sequences. | 2025-05-14 |
