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prokbert
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public |
ProkBERT is a genomic language model specifically designed for microbiome applications. It leverages the power of machine learning to decipher complex microbial interactions, predict functionalities, and uncover novel patterns in extensive datasets. The ProkBERT model family, built on transfer learning and self-supervised methodologies, capitalizes on the abundant genomic data available.
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2025-05-30 |
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piranha-polio
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public |
Poliovirus Investigation Resource Automating Nanopore Haplotype Analysis
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2025-05-30 |
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targetdb
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public |
Package with an application to generate report on potential drug targets.
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2025-05-30 |
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regenie
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public |
Regenie is a C++ program for whole genome regression modelling of large genome-wide association studies (GWAS).
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2025-05-29 |
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msfragger
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public |
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
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2025-05-29 |
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bioconductor-decipher
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public |
Tools for curating, analyzing, and manipulating biological sequences
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2025-05-29 |
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hamronization
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public |
Tool to convert and summarize AMR gene detection outputs using the hAMRonization specification
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2025-05-29 |
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rsem
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public |
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data.
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2025-05-29 |
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kmetashot
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public |
Fast taxonomic classifier for metagenome bins basato su k-mer/minimizer
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2025-05-29 |
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evidencemodeler
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public |
Evidence Modeler combines ab intio gene predictions, protein alignments, and transcript alignments into weighted consensus gene structures
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2025-05-29 |
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beagle-lib
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public |
general purpose library for evaluating the likelihood of sequence evolution on trees
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2025-05-29 |
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ionquant
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public |
A label free quantification tool
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2025-05-29 |
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rtg-tools
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public |
RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation.
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2025-05-29 |
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phylopypruner
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public |
Tree-based orthology inference.
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2025-05-29 |
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entrez-direct
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public |
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process.
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2025-05-28 |
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mcl
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public |
MCL - a cluster algorithm for graphs
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2025-05-28 |
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btllib
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public |
Bioinformatics common code library in C++ with Python wrappers, from Bioinformatics Technology Lab.
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2025-05-28 |
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r-sleuth
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public |
Tools for investigating RNA-Seq.
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2025-05-28 |
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metabat2
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public |
Metagenome binning.
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2025-05-28 |
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vidjil-algo
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public |
Vidjil is an open-source platform for the analysis of high-throughput sequencing data from lymphocytes.
|
2025-05-28 |
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mmpdb
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public |
A package to identify matched molecular pairs and use them to predict property changes
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2025-05-28 |
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digest
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public |
Fast, multi-use k-mer sub-sampling library
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2025-05-28 |
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arvados-python-client
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public |
Python API for Arvados
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2025-05-28 |
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cutadapt
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public |
Trim adapters from high-throughput sequencing reads
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2025-05-28 |
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unmicst
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public |
UNMICST - UnMicst Nuclear Segmentation Tool
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2025-05-28 |
