| Package Name | Access | Summary | Updated |
|---|---|---|---|
| r-ic10 | public | Implementation of the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. | 2025-06-12 |
| rearr | public | Chimeric alignment of CRISPR-seq | 2025-06-12 |
| perl-bio-automatedannotation | public | Automated annotation of assemblies. | 2025-06-12 |
| perl-gdgraph | public | Produces charts with GD. | 2025-06-12 |
| perl-extutils-manifest | public | Utilities to write and check a MANIFEST file. | 2025-06-12 |
| actc | public | PacBio utility to align clr to ccs reads | 2025-06-12 |
| mbg | public | Minimizer based sparse de Bruijn graph constructor | 2025-06-12 |
| pywgsim | public | pywgsim | 2025-06-12 |
| gottcha2 | public | Genomic Origin Through Taxonomic CHAllenge (GOTTCHA) v2. | 2025-06-12 |
| polap | public | POLAP: plant organelle long-read assembly pipeline | 2025-06-12 |
| proteinortho | public | Proteinortho is a tool to detect orthologous genes within different species. | 2025-06-12 |
| cramino | public | A tool for very fast quality assessment of long read cram/bam files. | 2025-06-12 |
| plannotate | public | Webserver and command line tool for annotating engineered plasmids. | 2025-06-12 |
| srnapipe | public | Pipeline for bioinformatic in-depth exploration of small RNA-seq data. | 2025-06-11 |
| perl-moosex-app | public | Write user-friendly command line apps with even less suffering | 2025-06-11 |
| perl-http-cookies | public | HTTP cookie jars. | 2025-06-11 |
| perl-html-tagset | public | Data tables useful in parsing HTML. | 2025-06-11 |
| perl-mime-tools | public | Tools to manipulate MIME messages. | 2025-06-11 |
| cogtriangles | public | low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches | 2025-06-11 |
| tadlib | public | A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains | 2025-06-11 |
| r-htssip | public | Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP). | 2025-06-11 |
| mavenn | public | MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect. | 2025-06-11 |
| taxtastic | public | Tools for taxonomic naming and annotation | 2025-06-11 |
| heliano | public | HELIANO: A fast and accurate tool for detection of Helitron-like elements | 2025-06-11 |
| genin2 | public | Genin2 is a lightining-fast bioinformatic tool to predict genotypes for H5 viruses belonging to the European clade 2.3.4.4b. | 2025-06-11 |
