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bioconductor-tcgacrcmrna
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public |
TCGA CRC 450 mRNA dataset
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2024-12-18 |
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bioconductor-bugphyzz
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public |
A harmonized data resource and software for enrichment analysis of microbial physiologies
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2024-12-18 |
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bioconductor-bladderbatch
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public |
Bladder gene expression data illustrating batch effects
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2024-12-18 |
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bioconductor-snadata
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public |
Social Networks Analysis Data Examples
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2024-12-18 |
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bioconductor-copa
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public |
Functions to perform cancer outlier profile analysis.
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2024-12-18 |
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bioconductor-all
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public |
A data package
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2024-12-18 |
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bioconductor-leukemiaseset
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public |
Leukemia's microarray gene expression data (expressionSet).
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2024-12-18 |
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bioconductor-pedixplorer
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public |
Pedigree Functions
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2024-12-18 |
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bioconductor-hypergraph
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public |
A package providing hypergraph data structures
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2024-12-18 |
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bioconductor-prostatecancervarambally
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public |
Prostate Cancer Data
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2024-12-18 |
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bioconductor-rcyjs
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public |
Display and manipulate graphs in cytoscape.js
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2024-12-18 |
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bioconductor-mirnatarget
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public |
gene target tabale of miRNA for human/mouse used for MiRaGE package
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2024-12-18 |
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bioconductor-fabiadata
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public |
Data sets for FABIA (Factor Analysis for Bicluster Acquisition)
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2024-12-18 |
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bioconductor-lungexpression
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public |
ExpressionSets for Parmigiani et al., 2004 Clinical Cancer Research paper
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2024-12-18 |
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bioconductor-arrmnormalization
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public |
Adaptive Robust Regression normalization for Illumina methylation data
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2024-12-18 |
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bioconductor-rbioformats
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public |
R interface to Bio-Formats
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2024-12-18 |
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bioconductor-furrowseg
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public |
Furrow Segmentation
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2024-12-18 |
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bioconductor-rgraph2js
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public |
Convert a Graph into a D3js Script
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2024-12-18 |
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bioconductor-prostatecancertaylor
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public |
Prostate Cancer Data
|
2024-12-18 |
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makehub
|
public |
MakeHub is a command line tool for the fully automatic generation of of track data hubs for visualizing genomes with the UCSC genome browser.
|
2024-12-18 |
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bioconductor-rcy3
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public |
Functions to Access and Control Cytoscape
|
2024-12-18 |
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bioconductor-chemminedrugs
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public |
An annotation package for use with ChemmineR. This package includes data from DrugBank. DUD data can be downloaded using the "DUD()" function in ChemmineR.
|
2024-12-18 |
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bioconductor-keggdzpathwaysgeo
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public |
KEGG Disease Datasets from GEO
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2024-12-18 |
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bioconductor-donapllp2013
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public |
Supplementary data package for Dona et al. (2013) containing example images and tables
|
2024-12-18 |
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bioconductor-cancerdata
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public |
Development and validation of diagnostic tests from high-dimensional molecular data: Datasets
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2024-12-18 |
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bioconductor-rbcbook1
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public |
Support for Springer monograph on Bioconductor
|
2024-12-18 |
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chain2paf
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public |
convert CHAIN format to PAF format
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2024-12-18 |
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echidna
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public |
Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation.
|
2024-12-17 |
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canu
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public |
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing.
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2024-12-17 |
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kcounter
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public |
A simple package for counting DNA k-mers in Python. Written in Rust.
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2024-12-17 |
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trimadap
|
public |
Fast but inaccurate adapter trimmer for Illumina reads.
|
2024-12-17 |
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btllib
|
public |
Bioinformatics common code library in C++ with Python wrappers, from Bioinformatics Technology Lab
|
2024-12-17 |
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alignstats
|
public |
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
|
2024-12-17 |
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flye
|
public |
A fast and accurate de novo assembler for single molecule sequencing reads using repeat graphs.
|
2024-12-17 |
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open-cravat
|
public |
OpenCRAVAT - variant analysis toolkit
|
2024-12-17 |
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evofr
|
public |
Tools for evolutionary forecasting
|
2024-12-17 |
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pywgsim
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public |
pywgsim
|
2024-12-17 |
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r-whopgenome
|
public |
Provides very fast access to whole genome, population scale variation data from VCF files and sequence data from FASTA-formatted files. It also reads in alignments from FASTA, Phylip, MAF and other file formats. Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
|
2024-12-17 |
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el_gato
|
public |
Perform Legionella pneumophila Sequence Based Typing (SBT) from short reads or assemblies.
|
2024-12-17 |
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mrbayes
|
public |
Bayesian Inference of Phylogeny
|
2024-12-17 |
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beagle-lib
|
public |
general purpose library for evaluating the likelihood of sequence evolution on trees
|
2024-12-17 |
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trycycler
|
public |
Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes
|
2024-12-17 |
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bioconductor-dnacopy
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public |
DNA Copy Number Data Analysis
|
2024-12-17 |
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bioconductor-amountain
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public |
Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
|
2024-12-17 |
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bellmans-gapc
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public |
A language and compiler for algebraic dynamic programming.
|
2024-12-17 |
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bioconductor-cispath
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public |
Visualization and management of the protein-protein interaction networks.
|
2024-12-17 |
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bioconductor-flowpeaks
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public |
An R package for flow data clustering
|
2024-12-17 |
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bioconductor-gdsfmt
|
public |
R Interface to CoreArray Genomic Data Structure (GDS) Files
|
2024-12-17 |
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bioconductor-grenits
|
public |
Gene Regulatory Network Inference Using Time Series
|
2024-12-17 |
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bioconductor-fithic
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public |
Confidence estimation for intra-chromosomal contact maps
|
2024-12-17 |
