| Package Name | Access | Summary | Updated |
|---|---|---|---|
| ucsc-pslcdnafilter | public | Filter cDNA alignments in psl format. Filtering criteria are comparative, selecting near best in genome alignments for each given cDNA and non-comparative, based only on the quality of an individual alignment. | 2025-06-22 |
| ucsc-blat | public | Standalone BLAT v. 39x1 fast sequence search command line tool. | 2025-06-22 |
| ucsc-bedtogenepred | public | Convert bed format files to genePred format. | 2025-06-22 |
| ucsc-liftover | public | Move annotations from one assembly to another. | 2025-06-22 |
| ucsc-stringify | public | Convert file to C strings. | 2025-06-21 |
| ucsc-fatovcf | public | Extract VCF from a multi-sequence FASTA alignment. | 2025-06-21 |
| ucsc-wigtobigwig | public | Convert ascii format wig file (in fixedStep, variableStep). | 2025-06-21 |
| ucsc-bedgraphtobigwig | public | Convert a bedGraph file to bigWig format. | 2025-06-21 |
| bioconductor-geometadb | public | A compilation of metadata from NCBI GEO | 2025-06-21 |
| mimi | public | Molecular Isotope Mass Identifier. | 2025-06-21 |
| seqsero2s | public | Simplified Salmonella serotype prediction from genome sequencing data | 2025-06-21 |
| hictk | public | Blazing fast toolkit to work with .hic and .cool files | 2025-06-21 |
| ezcharts | public | eCharts plotting API. | 2025-06-21 |
| hmftools-gene-utils | public | Routines to generate resources files from Ensembl for use by many of the HMF applications | 2025-06-21 |
| mmdb2 | public | C++ toolkit for working with macromolecular coordinate files | 2025-06-21 |
| r-ukbrapr | public | R functions to use in the UK Biobank Research Analysis Platform (RAP) | 2025-06-21 |
| mm2plus | public | Fast long-read mapper and whole-genome aligner (accelerated version of minimap2) | 2025-06-21 |
| biobb_vs | public | Biobb_vs is the Biobb module collection to perform virtual screening studies. | 2025-06-20 |
| godmd | public | GOdMD Conformational Transitions with discrete Molecular Dynamics | 2025-06-20 |
| biobb_structure_utils | public | Biobb_structure_utils is the Biobb module collection to modify or extract information from a PDB structure file. | 2025-06-20 |
| biobb_pytorch | public | Biobb_pytorch is the Biobb module collection to create and train ML & DL models. | 2025-06-20 |
| biobb_pmx | public | Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions. | 2025-06-20 |
| biobb_model | public | Biobb_model is the Biobb module collection to check and model 3d structures, create mutations or reconstruct missing atoms. | 2025-06-20 |
| demuxlet | public | Genetic multiplexing of barcoded single cell RNA-seq | 2025-06-19 |
| mzspeclib | public | HUPO-PSI Spectral library format | 2025-06-19 |
