|
ucsc-bedextendranges
|
public |
Extend length of entries in bed 6+ data to be at least the given length, taking strand directionality into account.
|
2025-06-28 |
|
ucsc-chainswap
|
public |
Swap target and query in chain.
|
2025-06-28 |
|
pytaxonkit
|
public |
Python bindings for the TaxonKit library.
|
2025-06-27 |
|
resistify
|
public |
A resistance gene annotation tool.
|
2025-06-27 |
|
metabolights-utils
|
public |
MetaboLights open metabolomics data repository command line interface (CLI), common MetaboLights data models, utility methods and classes.
|
2025-06-27 |
|
dwgsim
|
public |
Whole Genome Simulator for Next-Generation Sequencing
|
2025-06-27 |
|
starcode
|
public |
Starcode: sequence clustering based on all-pairs search
|
2025-06-27 |
|
bioconductor-missmethyl
|
public |
Analysing Illumina HumanMethylation BeadChip Data
|
2025-06-27 |
|
ucsc-twobitdup
|
public |
check to see if a twobit file has any identical sequences in it
|
2025-06-27 |
|
axe-demultiplexer
|
public |
Rapid competitive read demulitplexer. Made with tries.
|
2025-06-27 |
|
ucsc-xmltosql
|
public |
Convert XML dump into a fairly normalized relational database.
|
2025-06-27 |
|
ucsc-twobitmask
|
public |
Apply masking to a .2bit file, creating a new .2bit file.
|
2025-06-27 |
|
ucsc-wigcorrelate
|
public |
Produce a table that correlates all pairs of wigs.
|
2025-06-27 |
|
ucsc-validatemanifest
|
public |
Validates the ENCODE3 manifest.txt file.
|
2025-06-27 |
|
ucsc-toupper
|
public |
Convert lower case to upper case in file. Leave other chars alone.
|
2025-06-27 |
|
ucsc-validatefiles
|
public |
Validates the format of different genomic files.
|
2025-06-27 |
|
ucsc-trfbig
|
public |
Mask tandem repeats on a big sequence file.
|
2025-06-27 |
|
ucsc-transmappsltogenepred
|
public |
Convert PSL alignments of mRNAs to gene annotations.
|
2025-06-27 |
|
ucsc-wordline
|
public |
Chop up words by white space and output them with one.
|
2025-06-27 |
|
emvc-2
|
public |
An efficient SNV variant caller based on the expectation maximization algorithm.
|
2025-06-27 |
|
fgap
|
public |
FGAP: an automated gap closing tool
|
2025-06-27 |
|
bioconductor-illuminahumanmethylationepicv2manifest
|
public |
Manifest for Illumina's EPIC v2.0 methylation arrays
|
2025-06-27 |
|
bioconductor-data-packages
|
public |
A package to enable downloading and installation of Bioconductor data packages
|
2025-06-27 |
|
bioconductor-illuminahumanmethylationepicv2anno.20a1.hg38
|
public |
Annotation for Illumina's EPIC v2.0 methylation arrays
|
2025-06-27 |
|
rmlst_api
|
public |
Python package to perform rMLST through the PubMLST API.
|
2025-06-27 |
