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ont-modkit
|
public |
A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.
|
2025-04-22 |
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phytest
|
public |
Quality control for phylogenetic pipelines using pytest
|
2025-04-22 |
|
khipu-metabolomics
|
public |
Python library for generalized, low-level annotation of MS metabolomics
|
2025-04-22 |
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trimnami
|
public |
Read-trimming pipelines for multiple samples
|
2025-04-22 |
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koverage
|
public |
Read-coverage statistics pipelines for multiple samples
|
2025-04-22 |
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kosudoku
|
public |
kosudoku: a suite to rapidly create whole genome knockout collections for microorganisms
|
2025-04-22 |
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assemblycomparator2
|
public |
assemblycomparator2: Compare prokaryotic genomic assemblies
|
2025-04-22 |
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deepdirect
|
public |
In silico approach to generate mutations for protein complexes towards a specified direction (increase/decrease) in binding affinity.
|
2025-04-22 |
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mass2chem
|
public |
Common utilities for interpreting mass spectrometry data
|
2025-04-22 |
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jms-metabolite-services
|
public |
conversion, search of metabolic models and metabolomics data
|
2025-04-22 |
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metdatamodel
|
public |
Data models for metabolomics
|
2025-04-22 |
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cascade-config
|
public |
Cascading configuration from the CLI and config files.
|
2025-04-22 |
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r-erah
|
public |
Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics.
|
2025-04-22 |
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gogstools
|
public |
GenOuest tools for manipulating Official Gene Sets
|
2025-04-22 |
|
sharg
|
public |
A modern argument parser for C++ tools.
|
2025-04-22 |
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amplisim
|
public |
Plain simple amplicon sequence simulator for in-silico genomic sequencing assays.
|
2025-04-22 |
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pbsim3
|
public |
A simulator for all types of Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) long reads
|
2025-04-22 |
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cospar
|
public |
A toolkit for dynamic inference of cell fate by integrating state and lineage information.
|
2025-04-22 |
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phylornn
|
public |
PhyloRNN
|
2025-04-22 |
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noise2read
|
public |
Turn noise to read
|
2025-04-22 |
|
gmwi2
|
public |
Enhanced Health Status Prediction from Gut Microbiome Taxonomic Profiles
|
2025-04-22 |
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viralmsa
|
public |
Reference-guided multiple sequence alignment of viral genomes
|
2025-04-22 |
|
viral_consensus
|
public |
Fast viral consensus genome reconstruction
|
2025-04-22 |
|
dupsifter
|
public |
A tool for PCR duplicate marking of WGBS (and WGS) data.
|
2025-04-22 |
|
ice-cream
|
public |
ICEcream: Integrative and Conjugative Elements Classification and gRaphical gEne Arrangement Method
|
2025-04-22 |
