|
ucsc-rasqlquery
|
public |
Do a SQL-like query on a RA file.
|
2025-06-29 |
|
ucsc-netchainsubset
|
public |
Create chain file with subset of chains that appear in the net.
|
2025-06-29 |
|
ucsc-faonerecord
|
public |
Extract a single record from a .FA file.
|
2025-06-29 |
|
ucsc-mafspeciessubset
|
public |
Extract a maf that just has a subset of species.
|
2025-06-29 |
|
ucsc-hgloadoutjoined
|
public |
Load new style (2014) RepeatMasker .out files into database.
|
2025-06-29 |
|
ucsc-genepredtoprot
|
public |
Create protein sequences by translating gene annotations.
|
2025-06-29 |
|
ucsc-findmotif
|
public |
Find specified motif in sequence.
|
2025-06-29 |
|
ucsc-fafilter
|
public |
Filter fa records, selecting ones that match the specified conditions.
|
2025-06-29 |
|
ucsc-ticktodate
|
public |
Convert seconds since 1970 to time and date.
|
2025-06-29 |
|
ucsc-hgloadout
|
public |
Load RepeatMasker .out files into database.
|
2025-06-29 |
|
ucsc-faalign
|
public |
Align two fasta files.
|
2025-06-29 |
|
ucsc-maskoutfa
|
public |
Produce a masked .fa file given an unmasked .fa and.
|
2025-06-29 |
|
cnvkit
|
public |
Copy number variant detection from high-throughput sequencing.
|
2025-06-29 |
|
bioconductor-dmrcate
|
public |
Methylation array and sequencing spatial analysis methods
|
2025-06-29 |
|
ucsc-fafrag
|
public |
Extract a piece of DNA from a .fa file.
|
2025-06-29 |
|
ucsc-maffetch
|
public |
Get overlapping records from an MAF using an index table.
|
2025-06-29 |
|
ucsc-gmtime
|
public |
Convert unix timestamp to date string.
|
2025-06-29 |
|
ucsc-chainsort
|
public |
Sort chains. By default sorts by score.
|
2025-06-29 |
|
ucsc-maketablelist
|
public |
Create/recreate tableList tables (cache of SHOW TABLES and DESCRIBE).
|
2025-06-29 |
|
ucsc-maffilter
|
public |
Filter out maf files. Output goes to standard out.
|
2025-06-29 |
|
ucsc-hgloadnet
|
public |
Load a generic net file into database.
|
2025-06-29 |
|
ucsc-bigwigmerge
|
public |
Merge together multiple bigWigs into a single output bedGraph.
|
2025-06-29 |
|
ucsc-hubpubliccheck
|
public |
Checks that the labels in hubPublic match what is in the hub labels.
|
2025-06-29 |
|
ucsc-maffrag
|
public |
Extract maf sequences for a region from database.
|
2025-06-29 |
|
ucsc-hgfindspec
|
public |
Create hgFindSpec table from trackDb.ra files.
|
2025-06-29 |
