|
aster
|
public |
Accurate Species Tree EstimatoR series; a family of optimation algorithms for species tree inference implemented in C++.
|
2025-07-21 |
|
gw
|
public |
View genomic sequencing data and vcf files
|
2025-07-21 |
|
vuegen
|
public |
VueGen automates the creation of reports from bioinformatics outputs,
supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js,
Jupyter notebooks, and Streamlit web applications. Users simply
provide a directory with output files—such as plots, tables, networks,
Markdown text, and HTML files—and VueGen compiles them into a structured report.
|
2025-07-21 |
|
squigualiser
|
public |
Visualise ONT raw signals
|
2025-07-21 |
|
htseq
|
public |
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
|
2025-07-21 |
|
vamos
|
public |
VNTR annotation using efficient motif selection.
|
2025-07-21 |
|
perl-extutils-parsexs
|
public |
Converts Perl XS code into C code.
|
2025-07-21 |
|
gnparser
|
public |
GNparser normalises scientific names and extracts their semantic elements.
|
2025-07-21 |
|
rdeval
|
public |
A general purpose, multithreaded read analysis and manipulation tool.
|
2025-07-21 |
|
bioconductor-hmmcopy
|
public |
Copy number prediction with correction for GC and mappability bias for HTS data
|
2025-07-21 |
|
jbrowse2
|
public |
The JBrowse 2 Genome Browser
|
2025-07-21 |
|
grz-check
|
public |
grz-check is a tool for validating incoming files of Modellvorhaben §64e submissions to Genomrechenzentren (GRZ) in Germany.
|
2025-07-21 |
|
ensemblcov
|
public |
Parallel threaded variant linker.
|
2025-07-21 |
|
hmftools-neo
|
public |
Identification of neoepitope and calculation of allele specific neoepitope binding and presentation likelihood.
|
2025-07-21 |
|
hmftools-sage
|
public |
SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage.
|
2025-07-21 |
|
hmftools-linx
|
public |
LINX is an annotation, interpretation and visualisation tool for structural variants.
|
2025-07-21 |
|
hmftools-purple
|
public |
PURPLE is a purity ploidy estimator for tumor samples.
|
2025-07-21 |
|
hmftools-bam-tools
|
public |
Rapidly process BAMs for various tasks.
|
2025-07-21 |
|
hmftools-amber
|
public |
Generates a tumor BAF file for use in PURPLE.
|
2025-07-21 |
|
piscem-infer
|
public |
piscem-infer is a flexible tool to perform target quantification from bulk-sequencing data
|
2025-07-20 |
|
pydustmasker
|
public |
Python library for identification and masking of low-complexity regions in nucleotide sequences.
|
2025-07-19 |
|
bygul
|
public |
Bygul is an amplicon read simulating tool that can generate different sample read proportions based on user input.
|
2025-07-18 |
|
scispacy
|
public |
A full SpaCy pipeline and models for scientific/biomedical documents.
|
2025-07-18 |
|
pyfastx
|
public |
pyfastx is a python module for fast random
access to sequences from plain and gzipped
FASTA/Q file
|
2025-07-18 |
|
pyrodigal
|
public |
Python bindings to Prodigal, an ORF finder for microbial sequences.
|
2025-07-18 |
