| Package Name | Access | Summary | Updated |
|---|---|---|---|
| esme_psmpi_5_12_1 | public | Earth System Modelling Environment (ESME) - A bundle for scientific computing packages for climate modelling with MPI support. | 2025-08-21 |
| esme_omb_psmpi_5_12_1 | public | OSU Micro Benchmarks | 2025-08-21 |
| esme_pio_psmpi_5_12_1 | public | ParallelIO - High-level parallel I/O library | 2025-08-21 |
| gxf2bed | public | Fastest GTF/GFF-to-BED converter chilling around | 2025-08-21 |
| btrim | public | This tool is made to remove "tips" (short dead ends) from a compacted de Bruijn graph and more generally to remove sequencing errors. Used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336) | 2025-08-21 |
| mameshiba | public | mameshiba installs only the dependencies needed to run MameShiba. | 2025-08-21 |
| shiba | public | A versatile method for systematic identification of differential RNA splicing across platforms | 2025-08-21 |
| hmnillumina | public | A parser for Illumina run | 2025-08-21 |
| gentle | public | Software suite for DNA cloning | 2025-08-21 |
| disco | public | Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler. | 2025-08-21 |
| pcne | public | Estimates plasmid copy number from assembled genome. | 2025-08-21 |
| sparseassembler | public | No Summary | 2025-08-21 |
| macsyfinder | public | MacSyFinder: Detection of macromolecular systems in protein datasets using systems modelling and similarity search | 2025-08-21 |
| pyskani | public | PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining. | 2025-08-21 |
| dbg2olc | public | Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies | 2025-08-21 |
| assemblyutility | public | No Summary | 2025-08-21 |
| sparc | public | No Summary | 2025-08-21 |
| perl-findbin | public | Locate directory of original perl script. | 2025-08-20 |
| augustus | public | AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. It can be used as an ab initio program, which means it bases its prediction purely on the sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources such as EST, MS/MS, protein alignments and synthenic genomic alignments. | 2025-08-20 |
| perl-bio-phylo | public | An object-oriented Perl toolkit for analyzing and manipulating phyloinformatic data. | 2025-08-20 |
| paraphase | public | HiFi-based caller for highly homologous genes | 2025-08-20 |
| perl-bio-bigfile | public | Low-level interface to BigWig & BigBed files | 2025-08-20 |
| perl-bio-db-hts | public | Read files using HTSlib including BAM/CRAM, Tabix and BCF database files | 2025-08-20 |
| bioconductor-singlecelltk | public | Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data | 2025-08-20 |
| hmnfusion | public | Fusion analysis from DNA genomics. | 2025-08-20 |
