|
rgi
|
public |
This tool provides a preliminary annotation of your DNA sequence(s) based upon the data available in The Comprehensive Antibiotic Resistance Database (CARD). Hits to genes tagged with Antibiotic Resistance ontology terms will be highlighted. As CARD expands to include more pathogens, genomes, plasmids, and ontology terms this tool will grow increasingly powerful in providing first-pass detection of antibiotic resistance associated genes. See license at CARD website.
|
2025-09-01 |
|
vcfanno
|
public |
Annotate a VCF with other VCFs/BEDs/tabixed files.
|
2025-09-01 |
|
chromap
|
public |
Fast alignment and preprocessing of chromatin profiles
|
2025-08-31 |
|
perl-parallel-forkmanager
|
public |
A simple parallel processing fork manager
|
2025-08-30 |
|
seqsizzle
|
public |
A pager for viewing FASTQ files with fuzzy adaptor matching and coloring.
|
2025-08-30 |
|
perl-sys-info-driver-linux
|
public |
Linux driver for Sys::Info
|
2025-08-30 |
|
circtools
|
public |
circtools - a circular RNA toolbox.
|
2025-08-30 |
|
mach2
|
public |
Migration Analysis of Clonal Histories 2
|
2025-08-30 |
|
perl-net-http
|
public |
Low-level HTTP connection (client).
|
2025-08-30 |
|
harpy
|
public |
Process raw haplotagging data, from raw sequences to phased haplotypes.
|
2025-08-30 |
|
netmd
|
public |
NetMD is a computational method for identifying consensus behavior across multiple molecular dynamics simulations.
|
2025-08-30 |
|
samrefiner
|
public |
A program for gathering variant information from a SAM formated files.
|
2025-08-30 |
|
mitorsaw
|
public |
A tool for mitochondrial analysis for HiFi sequencing data
|
2025-08-29 |
|
bakta
|
public |
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids.
|
2025-08-29 |
|
swarm
|
public |
A robust and fast clustering method for amplicon-based studies.
|
2025-08-28 |
|
mreps
|
public |
mreps is a flexible and efficient software for identifying serial repeats (usually called tandem repeats) in DNA sequences.
|
2025-08-28 |
|
earlgrey
|
public |
Earl Grey: A fully automated TE curation and annotation pipeline.
|
2025-08-28 |
|
perl-html-tableextract
|
public |
Perl module for extracting the content contained in tables within an HTML document, either as text or encoded element trees.
|
2025-08-28 |
|
hmftools-redux
|
public |
Post-processing read alignments to control sequencing errors and biases
|
2025-08-28 |
|
perl-log-any
|
public |
Bringing loggers and listeners together.
|
2025-08-28 |
|
perl-test2-plugin-nowarnings
|
public |
Fail if tests warn.
|
2025-08-28 |
|
perl-file-copy-recursive-reduced
|
public |
Recursive copying of files and directories within Perl 5 toolchain.
|
2025-08-28 |
|
perl-getopt-long-descriptive
|
public |
Getopt::Long, but simpler and more powerful.
|
2025-08-28 |
|
perl-moosex-getopt
|
public |
A Moose role for processing command line options.
|
2025-08-28 |
|
perl-bignum
|
public |
Transparent BigNumber support for Perl.
|
2025-08-28 |
